<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13344
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDNNDLADAVMADIQIPSASMMDSMDDLFGEPTNLVVQAPLLPGPPAPAELVLRIAEMQRHGCCTKLAWCNNGCIARISPDGGQVNFHVTMDDASTGAQCVSDASSNPIIALTGSEFVHLQYTSLGQELAVVDSVGNVQIFTGTTGLGRMSFAPTTGDSEAEGGRSDLDAVVGMYWLPQWPMDFRIPYIGPAVKTDGTWSSKLHYRDQQAPRLHHPVDGKTAFLYVTRNTLLTLCYQHDATKWGTASTTLEPLSTLDETLSHAAFCQQDNKLLLVTYDLRRHMRVYTITIDWNGTQGKDQYRSGTLRIAPSLLIGHTVSLEYVAPQDSEGTLLTSLQIILPVPIFAESSVPSYTTIVATFAQASYPSDAKQQAPSFTTICRWHLEQSTQNLHPSFAKLQKRAAAAVTLPNKNILRQQPDLVTAKIILTIQPMNHDTLIAFGASDGTVECRDRETWNIVAPTFGDTTTVTSLPQAGFDFTPSLEHSVHIMCNTDCAYMITLGVDQKLRCKPAALRYGWQAIDDGILDISGMHETAIACVAREHTLLTHHSNASALELFALLPPALAPEQYRHLLFDITRALTRAHDLGSLDEKTKRRMLLGDNYIIRCLGAQLSLVSAPDAQPGIGAQLAWVVLTAKQAHFALFSSCSTTSPPDPATLHSLRGLAIWSLELFTASLATLFTVHSTLVAKPNETPATALASHIASSSSPLLHLVLCSYPRTLLRYLALALTRYFKLVASSLVNSPSLLIKTDLLETISKIKTLPFRLEILAAPNGLLGEIDRVVGEAYAVSTIGPRERAEAELTMLFSPAPDLPTSLTGAVKSIWTRVLPKYTEEMDLGALYFYDTAGLMLQSRERTGARAKRSVDVLTKLPIAEVFSLLALSALAASVSAQQSSPDLVSIISVLQTGLPSSILQEALTNSAGLSSEIASEFRVATPTWFTALPTDIQTYLVSAANSPSAFANATAGIASTLNGTAIMNSTSVAAAQSSILSSNSAEISSEVASASAAGTTSGGAGSGAASATSAGAASSSSAAGASMPTALYGMGLAGAVGLVGVLAL |
Length | 1057 |
Position | Tail |
Organism | Rachicladosporium sp. CCFEE 5018 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Dothideomycetidae> Cladosporiales> Cladosporiaceae> Rachicladosporium>
unclassified Rachicladosporium.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.121 |
Instability index | 39.98 |
Isoelectric point | 5.57 |
Molecular weight | 112564.97 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP13344
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 302.69| 97| 210| 467| 594| 1
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467- 578 (154.81/129.75) TVTSLPQAGFdftpSLEHSVHIMCNTDCAYMITL.GVD.QKLRCKPAALRygwqaiddgilDISGMHETAIACVAREH.TLLTHHSNASALELFALLPPALAPEQYRHLLFDITR
631- 730 (147.88/74.87) VVLTAKQAHF....ALFSSCSTTSPPDPATLHSLrGLAiWSLELFTASLA...........TLFTVHSTLVAKPNETPaTALASHIASSSSPLLHLVLCSYPRTLLRYLALALTR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 71.26| 20| 20| 998| 1017| 2
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979- 995 (18.35/ 6.84) TSVAAAQSSILSSNSAE...
998- 1017 (31.87/18.03) SEVASASAAGTTSGGAGSGA
1018- 1034 (21.04/ 9.07) ...ASATSAGAASSSSAAGA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.46| 14| 20| 343| 362| 3
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343- 356 (26.13/22.26) PIFAESSVPSYTTI
366- 379 (26.33/ 8.90) PSDAKQQAPSFTTI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 88.45| 31| 33| 876| 908| 4
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876- 908 (40.35/32.21) SLL..ALSAlAASVSAQQSSPDLVSIISVLqTGLP
910- 942 (48.10/28.84) SILqeALTN.SAGLSSEIASEFRVATPTWF.TALP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 218.03| 67| 164| 38| 113| 5
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38- 113 (104.91/95.30) QAPLLPGPPAPAELVLRIAemqRHgccTKLAWCNNGCIARISPDGGQVNFHVTMDDA.STGAQCVSDassNPIIALT
209- 276 (113.12/75.67) QAPRLHHPVDGKTAFLYVT...RN...TLLTLCYQHDATKWGTASTTLEPLSTLDETlSHAAFCQQD...NKLLLVT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 42.14| 14| 20| 428| 441| 6
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428- 441 (26.42/16.45) TIQPMNHDT..LIA..FG
446- 463 (15.72/ 7.07) TVECRDRETwnIVAptFG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 34.25| 12| 61| 742| 758| 7
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742- 758 (13.60/19.10) SPSlliktDLLETISKI
770- 781 (20.65/12.33) APN.....GLLGEIDRV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 92.75| 31| 190| 600| 630| 8
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600- 630 (57.22/35.25) GDNYIIRCLG......AQLSLV..SAPDAQPGI.GA.QLAW
783- 823 (35.53/18.92) GEAYAVSTIGpreraeAELTMLfsPAPDLPTSLtGAvKSIW
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