<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13330

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMEEQSSGTGSRELKRRRSEVQEPASHAEVQRPSAPSGEAMAPGSSAALTNGTSMVNGDAHLPNGNGHNAHDDGPPPPLDQSWREEGANVSLGKMLERLAQFCITDLTALVDELEEMPVQPSAAPVNGMTVLEDNDEVSVAKKRKIMDFAREQRDRFIRALVISDFSRNADDVANVIDVNLHLRKNDFAVAESIRSIGQLKLDSAQAKQPNPNIELAMELLSTGKTPSAPEFGYLPPPQITAQDLLKTLREMNVMLAARLNLHEDVPTVFESYSIANGRATFVVPAEFEVDLAVIDEELTSSFFFIDIRFLFKSSAESMDGALREHFEVEVNRAIRDNGLQGCYDTLHNFVLTHKINILHQQAGDLHKGRWYDTIKVDRMRGNLVVQYWTGRPGKKHWLEFGIASGAGTGKIVRKVESPVISVRWFQSSVEVKDTGLDIDWQQICLEDILLQTTAKHALAMLTAARSGMQTLTSGLLGMSMSVDVAEDSAAEHVLALRFPPLRRELRLSILPIDGQYSIAPPSAAAAHAQQRLNEDSTIDVPRRLASTLSAVTFETMHREATNLRWTQLADLARQGNLNALFGSDHWQWRAYVPNTSWGIDWAIGLTISPTGLKWWTVQLQTASDGNGRIVTLAHELSMSADTESVPSRKLLLQVARQAVAQVSFTMISLQLQTMQIPFRVEKQKLMSSDSSSATQRRTVMFIQFSKLVKRYPDKKWKPWALEPVRVTHHGVERKPGDDDSTTLRCRHDLRLALKEGTFTRLRQHLRRSQDRSISISTSGGLAIRLSTALGAPFIDQLQDHLASIYRLDRYVSILHNAQARCDTVSLGNLSFTYKSSSSYHAHLTFPSTSTQRTRLRLEPPDSNPHARIRIHLENSLNTARSQPFEQFVTLLLLTLPLLTAPCLAGRSVLLQPRSASWYSLKYLSPLPAVTFTLRIRVKSNSSTGSGQELKWHIEQERTKVNAESLPSELIASLRDLWKTSNPQIGYIGLGNGLVTDAKGISKALANIDNIVRGFGGAEKAALAKSEVRTGSARTPAGGEATVKSELKDSKADVIAID
Length1057
PositionTail
OrganismRachicladosporium sp. CCFEE 5018
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Cladosporiales> Cladosporiaceae> Rachicladosporium> unclassified Rachicladosporium.
Aromaticity0.06
Grand average of hydropathy-0.309
Instability index47.02
Isoelectric point8.07
Molecular weight117033.49
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU365082

GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13330
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.95|      31|     192|     358|     397|       1
---------------------------------------------------------------------------
  358-  397 (44.14/52.88)	LHQQAGDLhkgRWYDTIKVDRmRGNLVVQYwtgrpGKKHW
  556-  586 (58.81/36.63)	MHREATNL...RWTQLADLAR.QGNLNALF.....GSDHW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.06|      36|     191|      12|      47|       2
---------------------------------------------------------------------------
   12-   47 (60.63/38.46)	ELKRRRSEVQEPASHAEV........QRPSAPSGEAMAPGSSAA
  198-  241 (56.43/35.25)	QLKLDSAQAKQPNPNIELamellstgKTPSAPEFGYLPPPQITA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.29|      50|     284|     494|     553|       9
---------------------------------------------------------------------------
  494-  546 (80.20/67.10)	LALR...FPPLRRELRLSilpIDGQYSIAPPSAAAAHAQQRLNEDSTIDVPRRLAS
  751-  803 (78.08/44.00)	LALKegtFTRLRQHLRRS...QDRSISISTSGGLAIRLSTALGAPFIDQLQDHLAS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13330 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MEEQSSGTGSRELKRRRSEVQEPASHAEVQRPSAPSGEAMAPGSSAALTNGTSMVNGDAHLPNGNGHNAHDDGPPPPLDQSWREEGA
1
87










Molecular Recognition Features






MoRF SequenceStartStop




1) TGSRELKRRRSEVQEPASHAEVQRPSA
8
34