<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13245

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSERERDPSTTFRVGPPSPSSPAAGLLKENRQLPISSDHIPQTPTSPPLMSVSDSNHVSNFTPSQTSPNQATTQLPSTSSPPSSTPMSTQVSQQPTLSTTNSFPTPASSVSGQHANATSIDDTDHQSFNSTSQGPTRSVKISEQQTSEHRRTDHERQQSATGTGAGVRDFAKEQTDGDAMDVDKEPVARSDVQNLGLDSLQNHFTSAFHLCKSLPTVTGPDPSFDLISLYGLGPVAQSVARMDPVTGEKINRLRKSYEGKLKGLGLAGRNKPVKQEPGAPGSLRHLTMWPEEEWQNQKVMGKQIKVSDIDTALQGIQSRAMQLEPGMVPNNDFWEDVLGHEKPAKAQGSGDTGKKAAAPTPGNHSARPSNMSTAAMQESDRNRPSRGRKRHYDDNSFVGYGEGYADDDDDDNTGYHSNGEGTGKKKRKKDHVSKVSTPLSERGGSYGVGMFGIGAR
Length456
PositionHead
OrganismPenicillium steckii
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium.
Aromaticity0.05
Grand average of hydropathy-0.940
Instability index48.96
Isoelectric point6.54
Molecular weight49058.20
Publications
PubMed=28368369

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP13245
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     126.23|      25|      27|     102|     126|       1
---------------------------------------------------------------------------
   60-   74 (24.06/ 8.74)	NF.......TPSQ.........TSPNQATTQ
   79-  100 (27.93/11.35)	SS......PPSSTPMSTQVSQQPTLSTT...
  102-  126 (43.61/21.94)	SF......PTPASSVSGQHANATSIDDTDHQ
  127-  155 (30.63/13.17)	SFnstsqgPTRSVKISEQQTSEHR..RTDHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.04|      57|     165|     171|     233|       2
---------------------------------------------------------------------------
  171-  233 (86.29/56.72)	AKEQTDGdamDVDKEPVARSDVQNLGLDSlqNHFTSAFHLC.KSLPTvTGPDPSFDLISLYGLG
  344-  401 (97.76/49.02)	AKAQGSG...DTGKKAAAPTPGNHSARPS..NMSTAAMQESdRNRPS.RGRKRHYDDNSFVGYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.32|      18|      37|     284|     303|       4
---------------------------------------------------------------------------
  284-  303 (31.37/29.48)	RHLTMWP.....EEEWQNqkVMGKQ
  319-  341 (27.95/18.75)	RAMQLEPgmvpnNDFWED..VLGHE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13245 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LGLAGRNKPVKQEPGAPGSLRHLTMWPEEEWQNQKVMGKQIKVSDIDTALQGIQSRAMQLEPGMVPNNDFWEDVLGHEKPAKAQGSGDTGKKAAAPTPGNHSARPSNMSTAAMQESDRNRPSRGRKRHYDDNSFVGYGEGYADDDDDDNTGYHSNGEGTGKKKRKKDHVSKVSTPLSERGGSYGVGMFG
2) MSERERDPSTTFRVGPPSPSSPAAGLLKENRQLPISSDHIPQTPTSPPLMSVSDSNHVSNFTPSQTSPNQATTQLPSTSSPPSSTPMSTQVSQQPTLSTTNSFPTPASSVSGQHANATSIDDTDHQSFNSTSQGPTRSVKISEQQTSEHRRTDHERQQSATGTGAGVRDFAKEQTDGDAMDVDKEPVARSDVQNLG
264
1
452
196










Molecular Recognition Features






MoRF SequenceStartStop




1) KKKRKKDHV
424
432