<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13090

Description Uncharacterized protein
SequenceMTSRPPLAISQRQPQRTLSGSGLSQRPATQRSLSQQYLPQSPIRRSDTFTNEQGADGGDGAQTRYGTTPRRGGSKLKLELANDGIVHSGFVESPQNPDPLSANKVFTPSRVMSMADAPDLGDMSPQTSRCQTVDGDSAPLPMPPRRARFAAPTKRFQPPPINAPVKKDSRPKPFVLDAPPEAPRYSSMGKQEPCGRARKTEGGSQRDTNLFSGHADFYPWRGGHPEDQFSDNIIRIGYFDKAPAQPAQEAASAKAALFPSLKHKSGLQALSTILTGVLYQRRHIGQITAPSTFKPPPRVTLTDTKREVWLKDLANSTIPLRRLSRTIPHGIRGRVLLDQCLNKNVPADRAVWLAKCVGANEIRAFKRKGVNNTFVMGGEVKWIRDWTLCVEQFVETVIGAFIEEDWKAKVTYAIRLATHLYAEHLLDRDHYMEWLVSSLENSSEARLPMWLLLIQIYWKDMLKLRRYGRRLATAILKHHCVIYNSPDRDILLLLSTQLGSLVESLISTSPDSFVYPTTWTQHRDSLESFLSSGQESTYTMFKAIDFRNDSLTSSTVKTPPAVRSTLVALLDDMLRLPFKDDIPGQIRKATQNTPVLIRTTLEWCTSLYRFGAAKVYVAATILRSISDPNTDLTGEILGFLDADALQETPRKHSIYHLVSELVRSGHFSVPLYIQWLIARGGLLDPSEALPDGPCSMRLLAEIPAHSCPDSMKSLRASLLRRASFSVDDEANDIGTAIKYIKQTLSVPLEPNDPILQKPPMSVKKLAKKIGQSSRSLKFEVCWWLANGFVDSIVQRLQTEKTRLEPPERCFDIVRLLLEAAQDFSMLDATLGYMAHSSDVETLSYCVNTLSLHLPVFFAIGSAKTLFHSFYDRLKTISGEQGLGARPLLASLADLAPRLPGLESMASQLRKELLSADRSNAVDASSPLSDNMATQLQDDETELGEQIEKLANYTSADKHTMERLFHTIVSKLSVCWAKGDERQRPYSILLSRLRVFDAQYFDTLMKDWVQHIRKLTKRAPIAQMYPLLVSSGCLSLTTLLATAPRNQNQGTQTHPNAVGSASTYMQEILQMLMKPLVPDRIITLDDCYRFRIIQEQARLEHAKEVMLLVRGSLAEYAASRNQQPPRPQPLDDEKVKSHLFELLRDLVLLDPQAASQTLSLKSPDAKLATLIEALTTKLLVPHFGGGQKTFEQVLELANEFTLPFCQVKLSLNLAIHDPSTPEGAERLQAQFEQLSIAMDNAIEADNIMWTGMLSYLSSDITLHLKNRAEARFLDLFPSMKSLPFDETGSQSDVHMAENLLTVVDSVLRGTPMTKLTPFSSGIADRLTDLWEILGSTSEECAALKIVVLTHWLPLLLSYLALQASQLSAAVDPSKLPGSDTRARVLVILAGIVLELDKYPVSHLGPRVFDIALVLADNLPEEARLQCVRAVKDYTADPRLRYLFSFSADPAENFMLAHREKPPAGVHERRMMAMNLGMGLPPEKLTPFAFRRWEILNEPTPSVGDNDTSLSLTLFDARKI
Length1518
PositionKinase
Organismfungal sp. No.14919
KingdomFungi
LineageEukaryota> Fungi.
Aromaticity0.07
Grand average of hydropathy-0.248
Instability index45.35
Isoelectric point8.31
Molecular weight169287.34
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13090
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.94|      16|      18|     108|     125|       1
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  109-  125 (25.35/19.82)	SRVMSM.ADAPDLgDMSP
  128-  144 (27.59/10.76)	SRCQTVdGDSAPL.PMPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.36|      23|      23|     485|     507|       2
---------------------------------------------------------------------------
  485-  507 (37.05/18.35)	SPDRDILLLLSTQLGSLVESLIS
  509-  531 (43.31/22.57)	SPDSFVYPTTWTQHRDSLESFLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.90|      16|     135|     145|     160|       3
---------------------------------------------------------------------------
  145-  160 (28.80/15.17)	RRARFAAPTKRFQPPP
  166-  180 (24.62/11.82)	KKDSRPKPF.VLDAPP
  181-  193 (17.48/ 6.12)	EAPRYSSMGK..QEP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     385.37|     116|     244|     549|     668|       4
---------------------------------------------------------------------------
  549-  599 (31.61/21.12)	......................................................................................................DSLTSSTvkTPP.....AVRSTlVALLDDMLRLPFKDD...IPGQIRKATQNTPVlIRT
  600-  668 (93.91/43.36)	TLEWCTS........LYRFGAAKVYVAATILRSISDPNTDLTGEI.LGF..LDA...DALQETPRKH........SIYHLVSELVRSGHFS......................................................................
  841-  958 (125.19/61.22)	TLSYCVNtlslhlpvFFAIGSAK.....TLFHSFYDRLKTISGEQgLGArpLLA...SLADLAPRLP........GLESMASQL.RKELLS.......................adrsnAVDAS..SPLSDNMATQLQDDeteLGEQIEKLANYTSA.DKH
  959- 1080 (134.66/66.14)	TME...R........LFHTIVSKLSVCWAKGDERQRPYSILLSRL.RVF...DAqyfDTLMKDWVQHirkltkraPIAQMYPLLVSSGCLSlttllataprnQNQGTQT..HPN.....AVGSA.STYMQEILQMLMKPL...VPDRI.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.21|      13|      19|     685|     699|       5
---------------------------------------------------------------------------
  685-  697 (26.34/14.10)	PSEALPDGPCSMR
  703-  715 (25.87/ 8.20)	PAHSCPDSMKSLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.93|      15|      19|     335|     349|       6
---------------------------------------------------------------------------
  308-  322 (25.67/17.29)	VWLKDLANSTIPLRR
  335-  349 (26.26/17.88)	VLLDQCLNKNVPADR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.24|      12|      19|     721|     732|       7
---------------------------------------------------------------------------
  721-  732 (20.70/11.41)	RASFSVDDEAND
  741-  752 (21.54/12.16)	KQTLSVPLEPND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.35|      10|      19|     375|     386|       8
---------------------------------------------------------------------------
  375-  386 (15.18/15.01)	VMGGEVKwiRDW
  397-  406 (19.17/ 9.76)	VIGAFIE..EDW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.22|      34|     100|    1217|    1255|      12
---------------------------------------------------------------------------
 1217- 1250 (59.04/37.94)	PSTPEGAERLQAQFEQLSIAMDNAIEADNIMWTG
 1316- 1349 (54.18/33.60)	PFSSGIADRLTDLWEILGSTSEECAALKIVVLTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.31|      23|      25|      35|      57|      15
---------------------------------------------------------------------------
   35-   57 (41.05/27.50)	QQYLPQSPIRRSDTFTNEQGADG
   62-   84 (39.25/25.92)	QTRYGTTPRRGGSKLKLELANDG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13090 with Med12 domain of Kingdom Fungi
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