<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13081

Description U-box domain-containing protein 52-like isoform X1
SequenceMMRSTWRRIQDNTEDQGLVVVAIDTDKGSQHALRWAADHLISKGQIFVLLHVRKPPTIPTTTGKQVPLSEVNEEVASTFLQQFDLQTKEVFLPFQCYCNRRGLQCKEVIIDDTDVPKAIVDYVVEEXVDKLVLGASSRNVLTSLNLFGSFFKGTDVSTAVSKAAPDFCSIYIISKGRISSVRPASHPNTTKRRPARKFESSGNFQSTKSDPNAASLQVKSDVQRIGRGQEGEFSTRSYDGNMHKRINPEFLYPSTASCPNPGRTGIDQHLNYYQQDYVDVGVQKSHFSNLHQDPNAHIRSLDLSTFRKQKLSGGLNLHELSHQSTESYCSAESLEGEEAELGRLKHEFHPMMGVHNKAKDLDSWMAGKKGIGENFAEEMAGNEKERFKLAQGEDQAAQMEKMKVCDASPDFQYKRYTIVEIQKATNNFSDNLKIGEGGYGPVFKSTLDHTLVAIKILRSDADQGMKQFQQEVEVLSCIRHPNMVMLLGACPEYGCLIYEYMANGSLEDRLFCRNNTPPLTWQLRFKIAADIATGLLYLHQMKPEPLVHRDLKPANILLDTNFNSKIADVGLARLLPPSVAEAITQYRMTAAAGTFCYIDPEYQKTGLLGMKSDVYALGIILLQLITAQPPMGLAYNMEEAMDAGELEEMLDPRVNDWPMKETVEFAKLALKCCELRRKDRPDLGNVVLPVLNQLRDFACQSLPNLFL
Length707
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.08
Grand average of hydropathy-0.387
Instability index37.97
Isoelectric point6.18
Molecular weight79193.42
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13081
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.94|      37|     425|      13|      58|       1
---------------------------------------------------------------------------
   13-   58 (56.38/63.23)	TEDQGLVVVAIdtdkgsqhaLRWAADHLIS..KGQIFVLLHVRKPPTI
  446-  484 (59.56/44.50)	TLDHTLVAIKI.........LRSDADQGMKqfQQEVEVLSCIRHPNMV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.21|      12|      14|     265|     276|       2
---------------------------------------------------------------------------
  265-  276 (23.19/14.25)	GIDQ.HLNYYQQD
  281-  293 (18.02/ 9.64)	GVQKsHFSNLHQD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13081 with Med32 domain of Kingdom Viridiplantae
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