<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13076

Description pre-mRNA-processing protein 40A-like
SequenceMASNPQSSAAQPLCPPIVGSAGLPQNFGPPISMQFRPVVPVQQPQPFIPAASQQFYPIGQGISGSNAGISSAQNQQLQFFQPTQQLPPRPGQPGHGPPSSQAIPISYSQSNRPILSGSSQPQQNAQPISGTGIGGTGIPLSSSYTFTPLSYGQPQNNINTFTHYQPVSQMHAHVVPAAGQPWLPPGSQSTPLVTPVQQTVQQPSVTAPTVPATAVQPSPTQQSSSDWQEHTSPDGRRYYYNKKTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYYSKVTKQSKWTMPEELKLSREQAEKAASQSIQPETIMASHTSVSVTVSSVEPQSVSANSVSSTPSALIPSLASSPVPVTPVVAAVNPLSMVASGSQTVPAVLGAATTSAAGVHSTAAAVDATLVNTTTTTTTNIEIVPHQDVTTSVDGVSAQDLEEAKKGMAVAGQINIATAEEKTIDDEPLVYANKLEAKSAFKALLESANVESDWTWEQAMRVIINDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKARKEFTKMLEESKELTSSTRWSKAISMFEDDERFKAVERPRDREDLFENYLVELQKKERAKAQEEHKQNIMEYKQFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYVRDLEKEEEEQKKIHKEQLRWAERKNREEFRKLLEEHVAAGTLIAKIHWRDYCMKVKDLPAYLAVASNSSGSTPKDLFEDVAEELEKQYREDKTRIKDAMKLGKINMASTWTLDDFKSAIADDVGSPPISDVNLKLIFAELLERIKEKEEKEAKKRQCLADDFSELLYSIKGITASSKWKDSKSLFEDSQEYRSILEGSFRREIFEEYIMHLQEKAKEKERKREEEKTKKEKEREEKEKRKEKERKAKEKEREREKGKERSKKDETESENIDATDVYVSKEDRKRGKDKDRDKDKERKHRKRHHSTADDISSEKDEKEEPKKSRRHNSDRKKSRKQHAYTPESDGESRHKKHKREHRDGSRRNGAYEELEDGELGEDGEIR
Length1034
PositionUnknown
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.06
Grand average of hydropathy-0.999
Instability index58.41
Isoelectric point7.34
Molecular weight117214.58
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13076
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.89|      38|      38|     227|     264|       1
---------------------------------------------------------------------------
  227-  264 (76.29/47.10)	WQEHTSPDGRRYYYNKKTRQSSWEKPLELMTPIERADA
  268-  305 (72.61/44.46)	WKEFTTPEGRKYYYSKVTKQSKWTMPEELKLSREQAEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     177.58|      32|      32|     866|     897|       2
---------------------------------------------------------------------------
  535-  568 (26.42/ 8.58)	KKARKE.FTKMLEE.......SKELTSSTRWSKAISmfED.DE
  569-  608 (28.89/10.04)	RFKAVE.RPRDREDlfenylvELQKKERAKAQEEHK..QNiME
  651-  681 (38.14/15.47)	QEYVRD.LE.KEEE.......EQKKIHKEQLRWAER..KN.RE
  866-  897 (51.31/23.21)	QEKAKE.KERKREE.......EKTKKEKEREEKEKR..KE.KE
  944-  982 (32.82/12.34)	RDKDKErKHRKRHH.staddiSSEKDEKEEPKKSRR..HN.SD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     267.38|      43|      44|      40|      82|       3
---------------------------------------------------------------------------
    2-   32 (25.07/ 8.60)	......ASNPQSSAAQP.......lcP.............PIVGSAGlpQNF....GPPIS..
   33-   65 (50.87/25.41)	.........MQ...FRP.......vvP....VQQ.PQ...PFIPAAS..QQFYPI.GQGISGS
   66-  110 (66.69/35.72)	NAGISSAQNQQLQFFQP.....tqqlP....PRP.GQ...PGHGPPS..SQAIPI...SYSQS
  111-  136 (30.90/12.40)	NRPILSGSSQPQQ.....................nAQ...P.............IsGTGIGGT
  137-  170 (46.76/22.74)	GIPLSSSYT.....FTP........lS....YGQ.PQ...NNINTFT...HYQPV.SQ....M
  171-  225 (47.09/22.95)	HAHVVPAAGQ..PWLPPgsqstplvtPvqqtVQQ.PSvtaPTVPATA..VQPSPT.QQ..SSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     153.15|      32|      32|     306|     337|       4
---------------------------------------------------------------------------
  306-  337 (50.16/33.39)	AASQSIQPETIMASHTS...VSVT..VSSVEPQSVSA
  342-  372 (32.03/18.61)	ST.....PSALIPSLAS.spVPVTpvVAAVNPLSMVA
  373-  406 (39.89/25.01)	SGSQTV.PAVLGAATTSaagVHST..AAAVDATLVNT
  407-  432 (31.06/17.81)	TTTTTTNIEIV..PHQD...VTTS..VDGVSAQ....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     285.72|      69|     274|     466|     534|       5
---------------------------------------------------------------------------
  436-  509 (96.37/61.36)	EAKKGM.AVAGQINIATAEEKT.....IDDeplvyaNKLEAKSAFKALLES.ANVESDWTWEQAMRVIINDKRYGALKTLG
  687-  713 (28.75/12.72)	......................................LEEHVAAGTLI...AKIH..WR.DYCMKV..........KDLP
  726-  785 (86.55/54.30)	TPKDLFEDV......AEELEKQ.....YRE......DKTRIKDAMK..LGK.INMASTWTLDDFKSAIADDVGSPPISDV.
  786-  852 (74.05/45.31)	NLKLIFAELLERIKEKEEKEAKkrqclADD..............FSELLYSiKGITASSKWKDSKSLFEDSQEYRSILEGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.01|      17|      25|     983|     999|       6
---------------------------------------------------------------------------
  983-  999 (31.79/16.79)	RKKSRKQHAYTPESDGE
 1010- 1026 (31.21/16.36)	RDGSRRNGAYEELEDGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13076 with Med35 domain of Kingdom Viridiplantae
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