<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13075

Description U-box domain-containing protein 35-like isoform X3
SequenceMWLNKGNSERKDDARGLVAVAIDKDKGSQYSLKWAVDHILGKGQTVILIHVNQKASTLPSPTGSQVSISDVRDDVASTYRQEQDGQTKELFLPFRCFCTRKDIQCKDVVIEDVDIAKALIEYVSHNVIENLVVGASTKNGFMRRFKSTDVATTVSKGAPDFCTVYVISKGKISSVRSASRPAPTVSPLRNQLQAQNQLSIKSEPVESNNSYSSRAPLSPFEPPRNSIHSELESMKSPFTRRGLNGKSYGEISLPDSDISFVSSGRPSVDRMFPPIYDHLESSRTPRLSNCSDLDLQSFESVQSGPKSDLHSMHGISSFSHESDSSQTMEDVEAEMRRLKLELKQTMDMYSTACKEALTAKQKARELHRWKMEEERRLEEARLAEEAALAIAEKEKAKCKAAIEAAEAAQRIAELEAQKRLNAEMKAIKESEERKKVLESLAHKDCRYRKYTIEEIEAATEYFSETRKIGEGGYGPVYKCYLDHTPVAIKVLRPDAAQGRQQFQQEVEILSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFRRGNTPVLSWQVRFRIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPNVADNVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMFLQIITAKPPMGLTHHVEHAIEKGKFTEMLDPAVPDWPIEEALCFAKLSLRCSELRRKDRPDLGTEVLPELNRLRNLAEENMPNIVLVGSASASPNHSNISMNHDILSDPQFVQSGYESSRSRSSASSLSVTGRPPRIDG
Length794
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.06
Grand average of hydropathy-0.471
Instability index53.68
Isoelectric point6.71
Molecular weight88795.86
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13075
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.64|      12|      17|     209|     220|       1
---------------------------------------------------------------------------
  209-  220 (23.18/15.34)	NSYSS..RAPLSPF
  225-  238 (18.46/10.57)	NSIHSelESMKSPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.09|      18|      18|     374|     391|       2
---------------------------------------------------------------------------
  374-  391 (28.00/19.78)	ER.RLEEARLAEEAALAIA
  394-  412 (25.09/16.97)	EKaKCKAAIEAAEAAQRIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.27|      19|     503|     248|     267|       4
---------------------------------------------------------------------------
  247-  266 (29.42/21.27)	SYGEISLPDSDiSFVSSGRP
  267-  285 (35.85/21.59)	SVDRMFPPIYD.HLESSRTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.51|      35|     438|     286|     323|       6
---------------------------------------------------------------------------
  286-  323 (53.31/40.37)	RLSNCSDLDLQSFESVQSGPKSDLHSmhGIsSFSHE..SD
  727-  763 (57.19/32.41)	RLRNLAEENMPNIVLVGSASASPNHS..NI.SMNHDilSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13075 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QNQLSIKSEPVESNNSYSSRAPLSPFEPPRNSIHSELESMKSPFTRRGLNGKS
2) RLSNCSDLDLQSFESVQSGPKSDLHSMHGISSFSHESDSSQTMEDVEAEMRR
195
286
247
337










Molecular Recognition Features






MoRF SequenceStartStop




1) RMFPPIYD
270
277