<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13070

Description U-box domain-containing protein 52-like isoform X2
SequenceMASRLSPDDNLPANSTAVAIDKDKNSPHAVRWAIDHLVISNPIIVLIHVRHRNQGEPESDYDINQLFVPFRGYCARKGIQAREVVLEDVDISKALIDYVSRNLINSIVLGAATRGAISRKFKSDIPTTLIKTAPDFCSVYVISKGKILTVRTAQRPVSNTAAPPKAPIGMPPQIPFDQSEDDGYRGQYTKGVPGNAGSERLSFDNSSKAPIRDRHRSSPGNMSLDIDVVRGPSSSRQDSLSSDIDFPAKLSLGSVDISGQNLDFSSSNYESSSQSARDIEDEMRRLKLELKQTMDMYSSACKEALTAKKTANELHQWKMEESRRFEEARQAGEAALAMAEMEKAKCRAAIEAAEAAQKLAEMEAYRRRQAESKAKKESDEKNRALNALATNDVRYRKYSIVEIEEATENFSASNKIGEGGYGPVYKGKLDHTPVAIKILRPDAAQGKKQFQQEVEVLCSIRHPHMVLLLGACPEYGCLVYEYMHNGSLEDRLFRKGNTHPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLTTKSDIYSLGIMLLQIITAKPPMGLAHHVGRAIEKGALADLLDPAVPNWPMEEALSFAQLALQCAELRKRDRPDLANVILPELNRLRDLGYNNNGSSSSGYSQGHGGSDQSQGFNTSGCSRGHSGSDGFRSPFSRSRVSSSSSQESLSKSANSEPGSMLNLK
Length752
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.488
Instability index48.73
Isoelectric point8.46
Molecular weight82813.62
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13070
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.83|      16|      20|     684|     699|       1
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  684-  699 (32.34/16.76)	NGSSSSGYSQGHGGSD
  702-  717 (33.49/17.58)	QGFNTSGCSRGHSGSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.25|      20|      20|     330|     349|       2
---------------------------------------------------------------------------
  330-  349 (35.00/24.32)	QAGEAALAMAEMEKAKCRAA
  351-  370 (34.25/23.64)	EAAEAAQKLAEMEAYRRRQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.64|      22|      24|     173|     195|       3
---------------------------------------------------------------------------
  173-  195 (37.77/27.11)	QIPFDQSEDDGYRGQYtKGVPGN
  200-  221 (39.88/23.99)	RLSFDNSSKAPIRDRH.RSSPGN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.31|      68|     443|      80|     156|       4
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   80-  156 (97.17/92.21)	QAR..EVVLEDVDISKALID..YVSRnlINSIVLG...................AATRGAISRKFKSdipTTLIKTAPDFCSVYVIskgkILTVRTAQRP
  522-  612 (98.14/68.06)	QAKpePLVHRDLKPANILLDrnYVSK..ISDVGLArlvppsvadsvtqyhmtsaAGTFCYIDPEYQQ...TGMLTTKSDIYSLGIM....LLQIITAKPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.81|      16|      21|     386|     401|       6
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  386-  401 (26.91/16.70)	NALATNDVRYRKYSIV
  409-  424 (28.90/18.44)	NFSASNKIGEGGYGPV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.75|      23|     463|     265|     287|       7
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  265-  287 (37.67/23.74)	SSS..NYESSSQ...SARDIEDEMRRLK
  291-  318 (27.00/14.92)	KQTmdMYSSACKealTAKKTANELHQWK
  730-  752 (36.09/22.43)	SSS..SQESLSK...SANSEPGSMLNLK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13070 with Med32 domain of Kingdom Viridiplantae
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