<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13068

Description U-box domain-containing protein 52-like isoform X3
SequenceMLGIETVEGEPESDYDINQLFVPFRGYCARKGIQAREVVLEDVDISKALIDYVSRNLINSIVLGAATRGAISSYLSYRKFKSDIPTTLIKTAPDFCSVYVISKGKILTVRTAQRPVSNTAAPPKAPIGMPPQIPFDQSEDDGYRGQYTKGVPGNAGSERLSFDNSSKAPIRDRHRSSPGNMSLDIDVVRGPSSSRQDSLSSDIDFPAKLSLGSVDISGQNLDFSSSNYESSSQSARDIEDEMRRLKLELKQTMDMYSSACKEALTAKKTANELHQWKMEESRRFEEARQAGEAALAMAEMEKAKCRAAIEAAEAAQKLAEMEAYRRRQAESKAKKESDEKNRALNALATNDVRYRKYSIVEIEEATENFSASNKIGEGGYGPVYKGKLDHTPVAIKILRPDAAQGKKQFQQEVEVLCSIRHPHMVLLLGACPEYGCLVYEYMHNGSLEDRLFRKGNTHPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLTTKSDIYSLGIMLLQIITAKPPMGLAHHVGRAIEKGALADLLDPAVPNWPMEEALSFAQLALQCAELRKRDRPDLANVILPELNRLRDLGYNNNGSSSSGYSQGHGGSDQSQGFNTSGCSRGHSGSDGFRSPFSRSRVSSSSSQESLSKSANSEPGSMLNLK
Length711
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.489
Instability index48.40
Isoelectric point7.91
Molecular weight78300.52
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13068
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.83|      16|      20|     643|     658|       1
---------------------------------------------------------------------------
  643-  658 (32.34/17.03)	NGSSSSGYSQGHGGSD
  661-  676 (33.49/17.87)	QGFNTSGCSRGHSGSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.71|      20|      20|     289|     308|       2
---------------------------------------------------------------------------
  265-  287 (23.65/15.87)	TAKKTAneLHQWKMEESrRFEEA
  289-  308 (32.80/25.31)	QAGEAA..LAMAEMEKA.KCRAA
  310-  329 (31.26/23.72)	EAAEAA..QKLAEMEAY.RRRQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.64|      22|      25|     132|     154|       3
---------------------------------------------------------------------------
  132-  154 (37.77/24.47)	QIPFDQSEDDGYRGQYtKGVPGN
  159-  180 (39.88/21.66)	RLSFDNSSKAPIRDRH.RSSPGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.51|      22|     446|     224|     246|       4
---------------------------------------------------------------------------
  192-  206 (21.23/ 6.19)	SSSRQDSLS.SDIDFP......
  224-  245 (37.91/20.13)	SSSNYESSSQSARDIEDEMRRL
  689-  710 (38.36/20.50)	SSSSQESLSKSANSEPGSMLNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.81|      16|      21|     345|     360|       7
---------------------------------------------------------------------------
  345-  360 (26.91/18.38)	NALATNDVRYRKYSIV
  368-  383 (28.90/20.28)	NFSASNKIGEGGYGPV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13068 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SNTAAPPKAPIGMPPQIPFDQSEDDGYRGQYTKGVPGNAGSERLSFDNSSKAPIRDRHRSSPGNMSLDIDVVRGPSSSRQDSLSSDID
2) YNNNGSSSSGYSQGHGGSDQSQGFNTSGCSRGHSGSDGFRSPFSRSRVSSSSSQESLSKSANSEPGSMLNLK
117
640
204
711










Molecular Recognition Features






MoRF SequenceStartStop




1) GFRSPFSRSRV
677
687