<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13059

Description U-box domain-containing protein 52-like isoform X2
SequenceMAPPFSSDDNIPTNTTAVAIDKDKNSPHAVRWAIDHLVASNPYIILIHVRHRNLGESESDYDINQLFIPFRGYCARKAIQLKEVVLDDADICKALMDYVNKNLINNLVIGGATRNGLSSYLTYRKCKNDISASLIKSAPDFCSVYVISKGKILTMRTAQRPISNTATPPKAPSGMPPPIPSDQFEDDGSRAYYARGGSRNAGADRMSVDNTPKAPMRDRDRQRSSPANLSFDIDSAMRAAQPSSSQDSLSSDSSLPNKRSHGSIDFSDQNLDFSVISGPSTGQLPQSSRDIEAELRRLKLELKQTMDMYSTACKEALTAKQKANELHQWKMEEARKFEEARLAGEAALAMAEKEKAKCKAAIEAAEAAKRLAEMEAHRRRQAELKAKKEADEKNRALNALAHTDVRYRKYTIEEIEEATENFEAHNKIGEGGYGPVYKGKLDHTPVAIKVLRPDAAQGKKQFQQEVEVLSCMRHPNMVLLLGACPEYGCLVYEYMFNGSLEDRLFRRGNTPPLSWRRRFTIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLTTKSDIYSLGIMLLQIITAKPPMGIAHHVGRAIEKGTFADMLDPAVPNWPVEEALSFAQLALKCVELRKRDRPDLGTVIVPELNRLRDLGSSSDSHSHGCQGNSGGYSSDGNTGANGRSSRSMLSADSQVFFSCSG
Length738
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.478
Instability index47.22
Isoelectric point8.25
Molecular weight81487.47
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13059
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     156.91|      40|      41|     207|     247|       1
---------------------------------------------------------------------------
  162-  182 (26.74/11.93)	.ISNTatpPKAP...................SGMPPPI.PS...D
  207-  247 (69.90/48.55)	SVDNT...PKAPmRDRDRQRSSPANLSFDIDSAMRAAQ.PSSSQD
  250-  290 (60.27/36.58)	SSDSS..lPNK..RSHGSIDFSDQNLDFSVISGPSTGQlPQSSRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.93|      35|      71|     291|     326|       2
---------------------------------------------------------------------------
  307-  350 (44.33/25.41)	DMYSTACKEALTAKQKANELhqwkmeEArkfEEAR.LAGEAALAM
  352-  390 (43.61/26.64)	EKEKAKCKAAIEAAEAAKRL...aemEA...HRRRqAELKAKKEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.62|      42|     116|     511|     552|       3
---------------------------------------------------------------------------
  511-  552 (72.58/46.20)	PPLSWRRRFTIAAEIATALLFLHQAKPEPLVHRDLKPANILL
  623-  664 (75.03/48.00)	PPMGIAHHVGRAIEKGTFADMLDPAVPNWPVEEALSFAQLAL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13059 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSSSDSHSHGCQGNSGGYSSDGNTGANGRSS
2) TAQRPISNTATPPKAPSGMPPPIPSDQFEDDGSRAYYARGGSRNAGADRMSVDNTPKAPMRDRDRQRSSPANLSFDIDSAMRAAQPSSSQDSLSSDSSLPNKRSHGSI
692
157
722
264










Molecular Recognition Features






MoRF SequenceStartStop




NANANA