<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13039

Description U-box domain-containing protein 33-like
SequenceMGSEDTIYVAVGGVEESELTLLWVLHNLKPRKVCILHVHQPSKMISSMYGVDGNLAEIIFDQQQIRGLEEVGKDMMNRILDEYLLFCSQAGVSAIRLHIQMDDVAKGIVELIRRHNIKKLVMGAAADEHFSEGMWLMSEKAQYVNENAPFSCQIWFICRDHLVHTRFETAQSSNAPSPSGSSYLTSSTEAAGIFGSTVSEEREESECEIELYDVLHSGEEGSSNDQLFDRLEQALKEAESSNQKAFEESDRRVKAEMNATRAMRQAKMLERLYNECKRENETALAKQNESLENIKRLGEEELSVSREQNSILESRVANSESRMKQLEDELSSAVEQLQVSLKERDELQIELENSHKVIEELLRKQAEETSSTHMDQFNLDQLSVSEIHDATLDQLEICQKEKDELLVELENTRRINEELLRKQSEDTSNSHLQQPFIEFSLSEIEEATEDFDQLYKIAEGARGSVYYKCALRHTEVVIKVLGRNSFQDSNEFLQEVDDLIKLRHPNLVNLIGACPEKRALVYEYVPNGSLEDHLNSRNDMPPLSWQSRMHIATQLCSTLMFLHSGKLVHGNLKPGNILLDDNFGCKLSDFGSCRAFSLVENSSNMTESSNPNPYLDPDFRNSRRVSHSLDLYPFGIIVLQLLSGRSTQGIAESAQSELLNGGNLSSFLDSSAGNWPHQVAQLTHLAIRCCDINRSRRPDLASDVLKVLETMKPSIASIAYAPESNEDSEPPSYFLCPILQAVMSDPHVAADGYTYEATALQDWLADHDTSPMTNLRLPNLNLIPNFPLRSAIQQWQENR
Length799
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.479
Instability index60.14
Isoelectric point4.86
Molecular weight90352.25
Publications
PubMed=25893780

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13039
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     269.70|      55|      55|     336|     390|       1
---------------------------------------------------------------------------
  284-  333 (40.35/22.45)	......LAKQNE.....SLENIKRLGEEELsvsREQNSilESrvanSESRMKQLE.DELS.....SA
  336-  390 (92.00/61.39)	QL.QVSLKERDEL..QIELENSHKVIEELL...RKQAE..ET....SSTHMDQFNLDQLSVSEIHDA
  394-  447 (91.14/60.74)	QL.EICQKEKDEL..LVELENTRRINEELL...RKQSE..DT....SNSHLQQ.PFIEFSLSEIEEA
  453-  499 (46.22/26.88)	QLyKIAEGARGSVyyKCALRHTEVVIKVLG...RNSFQ..D.....SNEFLQE..VDDL........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.80|      18|     270|     502|     520|       5
---------------------------------------------------------------------------
  502-  520 (30.70/25.06)	LRHPNLvNLIGACPEKRAL
  775-  792 (34.09/22.84)	LRLPNL.NLIPNFPLRSAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.48|      15|      16|     222|     236|       6
---------------------------------------------------------------------------
  222-  236 (24.69/17.86)	SSNDQLFDRLEQALK
  240-  254 (24.78/17.96)	SSNQKAFEESDRRVK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13039 with Med32 domain of Kingdom Viridiplantae
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