<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13034

Description U-box domain-containing protein 35-like
SequenceMARRNGERKEHTAMVAVGIDKDKGSQYALKWTVDHLLSKGQYINLVHVKTKPSSIPTPSGLLTNISKVNDDVAKAYTQQVDNQAKEITSNEIIMEDTDIAKALIDYVSSSSIEILVLGAPTKGGFIRRFRSTELTTTVSKGAPNYCTVYVIGKGKISSVRSASSPPPARLHPPAPQPQQPPPSIIPDITESPSAQALFPRYRGSCMPPPPILDLYPAPLTIYFASVGAPSRPQHPPRNMYEDLEMKFSIACNRSPFTRPRNKYEPSVPESDISFVSSGRPSTDNMSSLHDNMDFGTQRLSISSEYDSISLGSSYSGNRSMDFSSQYESSSTSHESGRTSWSSQNMDDVEAEMRRLKQELKQTMEMYSAACKEALSAKQRAKELQSWKLQEEQKIEEARLAEEAALSLAEKEKAKCQVAIEAAQAAQMIAELEAQKRKIVEKNANKEADDRKLAINNFGHDLRYRKYTIQEIETATDLFSPSRKIGEGGYGPVYHCNLDHTPVAIKVLRPDAAQGQLQFQQEVEVLCCIRHPNMVLLLGACPEYCCLVYEYMANGSLEDRLFRRSNSPVLPWQVRFRIAAEIAAGLLFLHQTKPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGRLGIKSDIYSLGIMLLQIITAEPPMGLTHHVENAIENGNFAGILDPAVHDWPMEETLIFAKLALKCSELRRKDRPDLGRVVLPELDKLRTLADEKMPFITIGGSAGTSPNNSHVSTSSIQDGHDNSRSY
Length785
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.449
Instability index53.56
Isoelectric point6.55
Molecular weight87185.99
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13034
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.77|      22|      24|     299|     321|       1
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  274-  293 (34.20/19.22)	F.VSSGRPSTDN....MS.SLHDN..MD
  299-  321 (34.18/23.87)	LsISSEYDSISL....GS.SYSGNRSMD
  323-  346 (19.39/ 7.44)	...SSQYESSSTshesGRtSWSS.QNMD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.26|      23|      24|     164|     187|       2
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  164-  187 (44.35/20.58)	SPPPARLHPPAPQPQQPPPSIIpD
  191-  213 (44.90/17.43)	SPSAQALFPRYRGSCMPPPPIL.D
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.38|      20|      22|     221|     241|       3
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  221-  241 (36.13/26.63)	IYFaSVGAPSRPQHPPRNMYE
  245-  264 (39.25/24.36)	MKF.SIACNRSPFTRPRNKYE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.47|      43|      43|     354|     396|       4
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  354-  396 (72.35/54.28)	RLKQELKQTM.EMYSAACKEALSAKQRAK...EL..QSWKLQEEQKIEE
  398-  446 (53.12/37.88)	RLAEEAALSLaEKEKAKCQVAIEAAQAAQmiaELeaQKRKIVEKNANKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.22|      27|      48|     469|     495|       5
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  469-  495 (47.47/27.72)	QEIETATDLFSPSRKIGEGGYGPVYHC
  498-  518 (24.74/11.33)	DHTPVAIKVLRPDAAQGQLQF......
  520-  545 (48.01/28.11)	QEVEVLCCIRHPNMVLLLGA.CPEYCC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.21|      18|      25|      71|      93|       7
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   71-   93 (24.97/32.81)	DVAKAYTQQVDNqakeiTSNEII
   98-  115 (29.24/22.44)	DIAKALIDYVSS.....SSIEIL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.38|      24|     549|      45|      68|       8
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   45-   68 (40.50/27.92)	LVHVKTKPSSIPTPSGLLTNISKV
  596-  619 (40.88/28.25)	IVHRDLKPGNILLDRNYVSKISDV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13034 with Med32 domain of Kingdom Viridiplantae
Unable to open file!