<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13020

Description mediator of RNA polymerase II transcription subunit 33B-like isoform X2
SequenceMEVGTVWESVLEQTKSAQDKNSDPLVWAVQLSSRLNSAGVSLPSIDLAHLLVSHICWDNHLPITWKFLEKALTANFVPPMLVLALLSTRVIPKRKFHPTAYRLYMELLRRHAFPLKCQINGLNYQKIMKSIDDVLHLSLIFGVQVSEPGLLLVEFVFSIVWQLLDASLDDEGLLELTPEKRSIWPTVTQDMEIDTADNFNETRSAHHDVLYKGNTIIAIEIIVEFLQNKVTSRILFLARRNMPSHWEAFIQQLRVLAAKSVALRNSKHITPEKLLQLTSDTHNVLSRECKRISQQVLHAVMGDGSLTSPSGQWHGTSPSALWLPIDMFLEDAMAGPQVAASGAIDRLAGLVKALQAVNGTTWHDAFLGLWIAALRLVQRERDIIEGPVPRLDTCLCMLLSITTLVVANIVEEEESELIDETDGSPSNPTKEKQTTGRCRKGLISSLQMLGDYEALLTPPQAVCSVANQAAAKAIMFHSGRTVGNGYYECMSINDMPMNCSGNLRHLIIEACISRNLLDTSAYLWPGYVNVRANIPLSVPSQVPGWSSLMKGSPLTPTLINALVATPASSLPEIEKIYEIATKGSDDEKISAASILCGASLVRGWNIQEQVVLFIISLLSPPVPADYSGSESHLIRYAPFFNVLLVGISPVDCIQIFSLHGMVPLLAGALMPLCEVFGSTAPNGSWTLPTGEELTSHAVFSNAFTILLMLWKFDHPPVEHVMRDATPVGSERSPDYLLLVRNSKLSAFGKSAKDHLKIRRMSKILNFCMEPIFMDSFPKLKRWYRQHQKCIASTLSGLVQGTTVHQIVDALLNMMFRKIGRAAQSSTSTTSGSSSSSASGAEDILARLKVPAWDILEGAPYVLDAALTACAHGRIAPRELATGLKDLADFLPATLGTIISYFSAEVTRGIWKPVFMNGTDWPSPLANLSVVLQQIKKFIAATGVDVPSLETGGSSPAMLPLPLAALVSLTITYKLDKSSERSLVLLGPAMSSLGGSCPWPCMPIISALWAQKVKRWNDFLVFSSARTVFHHNSDAVVQLLRSCFTATLGLSPSIMCSNGGVGALLGHGFGSHFSGGMAPVSPGIMYLRSHRTIRDIMFMTEEIVSLLMFSVKEIASRLSQEKMEKLKKTTFGLRYGQVSLGTAMTRVKLAASLGASLVWLSGGLSLVQSLIKETLPSWFISAHTPELDRGEPGGVVSMLRGYALAYFAVLCGTFAWGVDSVSPESRRRPKVLDSHLEFVASALDGKISLGCDYATWRAYVTGFVSLMVGCTHKWVLDVNVDVLKRLSNGLRQWNEEELAIALLGLGGATATGTAAELIVEIGA
Length1322
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy0.176
Instability index46.63
Isoelectric point6.92
Molecular weight144313.82
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13020
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.33|      37|     152|    1021|    1061|       1
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 1021- 1061 (59.85/49.45)	FSSART..VFHHNSDAVVQLLRSCFTATLglspSIMCSNGGVG
 1178- 1216 (59.48/38.41)	FISAHTpeLDRGEPGGVVSMLRGYALAYF....AVLCGTFAWG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.16|      16|     153|     983|     998|       2
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  983-  998 (34.27/16.26)	VLLGPAM......SSLGGSCPW
 1137- 1158 (23.89/ 9.38)	VSLGTAMtrvklaASLGASLVW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     425.32|     120|     496|     340|     461|       8
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  303-  381 (105.15/64.33)	...............................................D......GSLTSPS..GQWHGTSPSALWLPIDMFL.E.DAMAGPQVAASGAIDRLAGlvKALQAVNGTTWHDA.FLGLWIAALRL..VQRER
  382-  504 (196.20/117.59)	D.IIEGPVPR..LDTCLCMLLSITTLVVANI...VEEE.ESELIDETD......GSPSNPTKEKQTTGRCRKGLISSLQMLG.DYEALLTPPQAVCSVANQAAA..KAIMFHSGRTVGNGyYECMSINDMPMncSGNLR
  505-  557 (36.08/14.60)	HlIIEACISRnlLDTS.AYLWPGYVNVRANIplsVPSQ.VPGWSSLMK......GSPLTPT..............................................................................
  853-  932 (87.87/47.75)	D.ILEGAPYV..LDAAL......TACAHGRI...APRElATGLKDLADflpatlGTIISYFSAEVTRG.....IWKPVFMNGtDWPS....PLANLSVVLQ......................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13020 with Med33 domain of Kingdom Viridiplantae
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