<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13009

Description pre-mRNA-processing protein 40A-like isoform X1
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQVQYGQTNRPLTSEPPQSHQSAPPLNSHMPGVGVPGVPPSSYGFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRARQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAGASQGTPSGSGVAPQALVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGANTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMTTAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSYGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length1026
PositionUnknown
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-1.152
Instability index58.52
Isoelectric point6.74
Molecular weight116532.76
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13009
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     149.86|      36|      38|     216|     251|       1
---------------------------------------------------------------------------
  199-  230 (38.44/18.65)	......SQQPPPSSADTNANV..psLTP.....QSSDWQEHTSAD
  231-  271 (58.89/32.77)	GRRYYYNKRARQSSWEKPLEL....MTPieradASTVWKEFTTPE
  272-  311 (52.53/28.37)	GRKYYHNKVTKESKWTIPEELklarEQA.....QAGASQGTPSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     112.17|      17|      17|     870|     886|       2
---------------------------------------------------------------------------
  565-  581 (19.17/ 6.46)	NDERFKAVERARDREDL
  870-  886 (26.07/11.70)	EKERKREEEKAKKEKDR
  888-  904 (25.32/11.13)	EKDKRKEKEKERKEKER
  934-  950 (22.49/ 8.98)	KEEKKKEKEKDRKHRKR
  977-  993 (19.12/ 6.42)	KKSRKHAHSPDSDSESR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      90.73|      14|      17|      24|      37|       3
---------------------------------------------------------------------------
   24-   37 (27.02/12.07)	QSYGSPLS.....SQFRPV
   44-   57 (23.61/ 9.66)	QHFVPAAS.....QQFRPV
  120-  133 (20.59/ 7.51)	HQSAPPLN.....SHMPGV
  148-  166 (19.52/ 6.75)	SSFGLPQNnvsapSQFHPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     159.69|      31|      34|     321|     351|       4
---------------------------------------------------------------------------
  321-  351 (51.82/35.82)	TAVS.AAETPTT.............AIPVSSNTLQDSSPVSVTPV
  357-  378 (36.18/22.41)	TSVS.G...PTT.............G.PVA.....QSAAMSATGV
  379-  406 (40.06/25.74)	QLPV.VSVTPVP.............AVPSRGSTV...SAPSVGAN
  407-  451 (31.63/18.50)	TAVTrSSETTATqdtmhfadgasaqDIEEAKKGMTTAGKVNMTPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     414.07|      94|     140|     463|     556|       5
---------------------------------------------------------------------------
  463-  533 (99.76/58.43)	..................................................................YANKLEAKNAFKSLLESAN.VQSDWTWEQTMREIINDKRYGALKTLGERKQA...................FNEYLG..QRKKLE....AEERRMRQ
  534-  602 (48.98/24.80)	KKAREEFTKMLEE...SKELTSSMRW.......................................sKAQSL...............................................fenderfkaverardredlFENYIV..DLERKEreyaAEEKR...
  603-  668 (77.70/43.82)	.......................................................................RNIAEYRKFLESCDfIKANSQWRKVQDRLEDDERCSRLEKI.DRLLI...................FQDYIH..DLEKEE....EEKKKMQK
  676-  809 (112.27/66.71)	RKNRDAFRKLMEEhvaDGTLTAKTYWrdyclkvkelpqylavasntsgstpkdlfedvaeeldkqyHEHKTRIKEAMKT.GKVTM.VYS.WTFEDFKAAISEDVGSSSISDI.NLKLV...................YDELLE..RAKEKE....EKEAKKRQ
  810-  867 (75.36/42.27)	RLA.DDFTRLLHT...YKEITAS.................................................................SDWEESKPLFE..ESQEYRSIAEESFRREI...................FEEYIThlQEK...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.53|      25|      29|      63|      87|       6
---------------------------------------------------------------------------
   63-   87 (47.70/28.92)	PNIGMPAVQNQQMQFSQ...PMQQFPPR
   91-  118 (41.03/23.80)	PGLSTPSQQPIQVQYGQtnrPLTSEPPQ
  180-  196 (23.79/10.58)	PWLSTG...NQNVSLAT...PTQ.....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13009 with Med35 domain of Kingdom Viridiplantae
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