<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13008

Description pre-mRNA-processing protein 40A-like isoform X2
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRARQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAGASQGTPSGSGVAPQALVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGANTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMTTAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSYGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length984
PositionUnknown
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-1.168
Instability index57.40
Isoelectric point6.70
Molecular weight112197.03
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13008
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     502.96|      69|      69|     483|     551|       1
---------------------------------------------------------------------------
  428-  494 (87.05/47.39)	KNAFKSLL.E...SANVQSDWTWEQTMREIINDKRYG........AL...KTLGERKQAFNEYLG............QR.KK.....lE..A.EERRMRQKKA
  495-  562 (96.95/53.67)	REEFTKMLEE...SKELTSSMRWSKAQSLFENDERFK........AV...ERARDREDLFENYIVD..........LER.KE.....rEyaA.EEKR....RN
  563-  636 (85.73/46.55)	IAEYRKFLES...CDFIKANSQWRKVQDRLEDDERCS........RL...EKI.DRLLIFQDYIHD..........LEK.EEeekkkmQ..K.EQLRRAERKN
  637-  709 (59.08/29.64)	RDAFRKLMEEhvaDGTLTAKTYW........RDYCLKvkelpqylAVasnTSGSTPKDLFEDVAEE..........LDK.Q...........yHEHKTRIKEA
  710-  770 (47.00/21.98)	.......MKT...GK.VTMVYSWT.....FE.D..FK........A.......AISEDVGSSSISDinlklvydelLERaKE.....kE..E.KEAKKRQRLA
  771-  838 (92.73/50.99)	.DDFTRLLHT...YKEITASSDWEESKPLFEESQEYR........SI...AEESFRREIFEEYITH..........LQE.KA......K..E.KERKREEEKA
  844-  882 (34.42/14.00)	REEKDKRKEK...EKE.....RKEKER....EREREK........GK...DRSKKDETDSEN.........................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     122.20|      16|      19|      24|      39|       2
---------------------------------------------------------------------------
   24-   39 (29.06/15.64)	QSYGSPLSSQFRPV..VP
   44-   61 (20.60/ 8.71)	QHFVPAASQQFRPVgqVP
   76-   88 (26.29/13.37)	Q.FSQPM.QQFPP...RP
  106-  118 (21.02/ 9.06)	SSFGLP...QNNVS..AP
  119-  133 (25.23/12.51)	SQF.HPISQVHAPV..AP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     175.74|      36|      39|     174|     209|       3
---------------------------------------------------------------------------
  153-  176 (32.41/12.29)	.....TQHTSQQPPPSSADTNA............NVP..S....LTP
  177-  212 (68.42/33.50)	QSSDWQEHTSADGRRYYYNKRARQ.......SSWEKPLEL....MTP
  218-  257 (52.70/24.24)	ASTVWKEFTTPEGRKYYHNKVTKE.......SKWTIPEELklarEQA
  258-  287 (22.21/ 6.28)	QAGASQGTPSGSGV.......APQalvatavSAAETP..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.73|      15|      15|     901|     915|       4
---------------------------------------------------------------------------
  901-  915 (26.98/15.48)	KDRKHRKRHAADDGS
  933-  946 (19.84/ 9.07)	.DRKKSRKHAHSPDS
  951-  963 (24.91/13.62)	RHRKHKRDH..RDGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.87|      27|      36|     303|     329|       5
---------------------------------------------------------------------------
  292-  321 (34.54/18.06)	..PVSsntlqDSSPVSVTPVANPSPTSVSGPT
  322-  339 (23.08/ 9.74)	TGPVA.....QSAAMSATGVQLP.........
  361-  379 (28.24/13.48)	VG..A.....NTA......VTRSSETTATQDT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.27|      15|      46|      90|     105|       6
---------------------------------------------------------------------------
   90-  105 (25.48/21.34)	QPGLSTPSQQpIQFA.P
  137-  152 (25.78/15.32)	QPWLSTGNQN.VSLAtP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.41|      13|      28|     886|     899|       8
---------------------------------------------------------------------------
  886-  899 (18.15/16.25)	SDSyGHKEEKKKEK
  916-  928 (22.26/13.35)	SDK.DDREESKKSR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13008 with Med35 domain of Kingdom Viridiplantae
Unable to open file!