<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP13004

Description mediator of RNA polymerase II transcription subunit 33B-like
SequenceMTVSIQAKGTTVWDWVLECTKSAREKNSDPLLWAVQLGSSLNSAGVSLPSIDLAHLLVSYICWDNHVPIAWKFLEKALTVKFVPPMLVLALLSSRVIPNRKFHPAAYRLYMELLRRHASALKCQISGPNYLKIMKSIDDVLHLSKIFGVQASEPGLLLVEFVFSIVWQLLDASLDDEGLLELTPEKRSIWPIVTQDMEIDNADNFHEKRNDHHDVLYKRNTMMAIEIIGEFLQNKVTSRILLLAQRNIPSHWEAFIQQLRVLSAKSVILRNSKHTTPEALLQLTSDTRKVLSRKCKTPSQQEFHLLIGSRSLTSASGRCHGTSPSAHWLPIDLFLEDAMDRSEVAATGATERLTGLLKALQAVNSTTWHDTFLGLWLAALRLVQRERDISEGPMPRLDTCLCLLLSISPLAVTNIVEEEKSELIDEIDCSQTTQTKEKQAPGRCHKGLISSLQMLNDYEALLTPPQSVRSVANQAAAKAIMVISGLTVGNGYYECMSSNDMPINCSGNMWHLIVEACIARNLLDTSAYVWPGYVNARPNIPRSVPSQVPGWSSLMKGSPLTPTLVNALIATPASSLAEIEKIYEIATKGSNDEKIYAASILCGASLIRGWNIQEHAILFITSLLSPPVPSDYSESESYLISYAPLLNVLLLGISSADCVQILSLHGMVPILAGMLMPLCEVFGSTAPDVSWTLPTGEELTSHAVFTNAFTLLLRLWRFDHPPVEHVMMGDATPVGSQLSPEYLLLVRNSKVSDFGKSPKDHLKMKRLSKNLNLTLELIFMDSFPKLKGWYRQHNKCIASTLSGLVQGTTVHQIVDALLNMMFRKISRSGQSSGSSSPSTSGADDVPLTLNVPAWDILEATPYVLDAALTACAHGRLSPRELATGLKDLADFLPATLATIVSYFSAEVTRGIWKPVFMNGSDWPSPAANLSNIEQQIKKIIAATGVDVPSLTTGRSSPAMLPLPLAALVSLTITYKLDKASERFLVLIGPALSSLAEGCPWPCMPIIASLWAQKVKRWNDFFVFSASRTVFHHSSDAVVQLLRSCFTSTLGLSPSTIYSNGGVGALIGHGFGSHFSGGMSPVSPGILYLRVHRSVRDIMFMTEEIVSLLMSSVRDIAGSREKPKNTKFGLRYGQVSLGAAMARVKLAASLGASLVWLSGGLSLVQSLIKETLPSWFISAHSADQDAGEPAGIVAMLGGYALAYFVVLCGTFAWGVDSASPASKRRPKVLGSHLEFLASAIDGKISLGCDYATWRAYVVRFVSLMVGCTQKWILDVNIDVLKRLSYGLIRWNEEELAMALLGLGGVRATTAAAELIIEIGA
Length1319
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy0.153
Instability index48.11
Isoelectric point7.35
Molecular weight144149.44
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP13004
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.74|      42|     124|     315|     356|       1
---------------------------------------------------------------------------
  315-  356 (76.24/45.26)	ASGRCH.GTSPSAHWLP.IDLFLEDAMD.RS..EVAATGATERLTGL
  440-  486 (56.49/31.65)	APGRCHkGLISSLQMLNdYEALLTPPQSvRSvaNQAAAKAIMVISGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.11|      12|      16|     739|     750|       2
---------------------------------------------------------------------------
  739-  750 (21.23/11.29)	SP.EYLLLVRNSK
  757-  769 (17.87/ 8.43)	SPkDHLKMKRLSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     204.73|      65|      76|     918|     993|       3
---------------------------------------------------------------------------
  874-  938 (40.16/18.14)	...........GRLSPRelatglkdladFL..PAT.LATIVS................yfsaevtrgiwkpvfmNGSDWPSPAANLSNIEQQIKK
  942- 1016 (110.09/60.99)	ATGVDVPSLTTGRSSPA...........ML..PLP.LAALVSLTITYKLDKASERFLV......ligpalsslaEGCPWPCMPIIASLWAQKVKR
 1211- 1256 (54.48/20.98)	AWGVDSASPASKR.RPK...........VLgsHLEfLASAIDGKISLGCDYATWRAYV.....................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.51|      26|     125|    1038|    1070|       6
---------------------------------------------------------------------------
  796-  822 (42.58/19.17)	CIASTLsGLVQGTT.VHQIVDALLNMMF
 1044- 1070 (43.94/25.23)	CFTSTL.GLSPSTIySNGGVGALIGHGF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP13004 with Med33 domain of Kingdom Viridiplantae
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