<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12997

Description U-box domain-containing protein 34-like isoform X2
SequenceMRRLKLELKQTMEMYSTGKEALTAKQTARELQLWKLEEERRLEEARLAEEAALAIAEKEKAKSKAAMEAAEAAQRIAEIESQKRVNAEMKAFKESVEKKKALDALAHSDYRYRKYTIEEIEAATEFFSEVLKIGEGGYGPVYKARLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMSNGSLEDRLFRRGNTPTLSWQLRFRIAAEIGTALLFLHQTKPEPIVHRDLKSANILLDRNFVSKISDVGLARLVPPSVADNVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQIITAKPPMGLTQHVQRAIEKGTFAQMLDPSIDDWPVQEALSFAKIALNCAELRRKDRPDLGKVVLPELNRLQLLAEETMHLTWEAGSPGHSPNYSQVSLQLEHSSCPNFLHSDEYSRSPPNENP
Length446
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.393
Instability index45.58
Isoelectric point6.27
Molecular weight50307.08
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12997
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.60|      18|      19|      50|      68|       1
---------------------------------------------------------------------------
   50-   67 (29.07/25.76)	EAALAIAEKEKAKS.KAAM
   71-   89 (25.53/15.24)	EAAQRIAEIESQKRvNAEM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.54|      33|     387|       1|      33|       2
---------------------------------------------------------------------------
    1-   33 (53.38/42.13)	MRRLKLELKQTMEM.YSTGKEALTAKQTARELQL
  390-  423 (53.17/41.94)	LNRLQLLAEETMHLtWEAGSPGHSPNYSQVSLQL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12997 with Med32 domain of Kingdom Viridiplantae
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