<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12993

Description mediator of RNA polymerase II transcription subunit 25-like isoform X3
SequenceMAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVENSEAQTESRLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKQNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGLPSLATNQSPVKMDMASVTSVTGPPPSSVNGSMVGRLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSVPRAPSQAIPTLQTSSPLTNTLEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNLSQARVMSSAALTGGTSIGLQSMVQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSLTGSGALTGAAQVLPNSGLSSFSSATSNVAGNSNIGISQPMGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPGLHSSNTPPGLHPSLDKPKKLNEMDMVVFKPQMSSQQQLQLQQQQMQPQLQQQQQQQNPQLQQQQLPHLQQQQLPQLQQQQQQQQLPQLQQQQLSQLQQQQQQQKQQQQQQQQSQHPQMQQQQLSQQQQMVGSGMGPAYVQGPG
Length796
PositionUnknown
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.04
Grand average of hydropathy-0.350
Instability index61.47
Isoelectric point8.85
Molecular weight85075.41
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12993
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.10|      23|      25|     700|     724|       1
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  700-  723 (41.79/14.14)	...PQLQQQQQQ.QN.PQLQQQQLPhlQQ
  724-  746 (31.94/ 6.29)	QqlPQLQQQQQQ.QQlPQLQQQQL.....
  756-  779 (46.37/12.43)	Q..KQQQQQQQQsQH.PQMQQQQLS..QQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     244.31|      48|      54|     184|     231|       3
---------------------------------------------------------------------------
  184-  213 (39.52/17.18)	....................................PPVDNV..............KN.S.QFLVLISENFMEGRAALSRS...G
  214-  253 (50.13/23.85)	LPSLATNQSPVKMD......MASV.......tsvtgPPPSSV..............NG.S...........MVGRLPVS......
  254-  311 (44.32/20.20)	VGNVAT..ATVKVEpttitsMATG............PAFSHVpsvprapsqaiptlQT.S.SPLT....NTLEGMT....S...G
  312-  362 (38.24/16.37)	.....DNMQELK.........PSV.sgmtqpsrpvpPAAANV...................NILNNLSQARVMSSAALTGGtsiG
  363-  408 (43.96/19.97)	LQSMV..QTPVAMH......M...snmissgmassvPPAHTV..............LS.SgQP..........TMTSLTGS...G
  417-  445 (28.15/10.02)	LPN.........SG......LSSF...........sSATSNV..............AGnS.NI..GISQP..MG...........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     214.45|      52|      54|     473|     524|       4
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  473-  508 (53.49/26.52)	.................................SG..VG.........MSQNMSALGQST......VSSGNGTMIPTPGMSQQVQS
  509-  554 (57.43/29.13)	GMQTLGVSNSSAASMP................lS...............QQTSSAL.QSAqskyvkVWEGN........LSGQRQG
  564-  630 (50.89/24.81)	GYRSASASETLAAHWPqtmqivrlisqdhmnnkQY..VGkadflvfraMNQH.GFLGQ................LQEKKLCAVIQL
  631-  670 (52.64/25.97)	PQQTLLLSVSDKAC.....................rlIG.........ML..FPGLHSSN......TPPGLHPSLDKP........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12993 with Med25 domain of Kingdom Viridiplantae
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