<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12992

Description mediator of RNA polymerase II transcription subunit 25-like isoform X2
SequenceMAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQKNSTSNVEFSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVENSEAQTESRLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKQNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGLPSLATNQSPVKMDMASVTSVTGPPPSSVNGSMVGRLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSVPRAPSQAIPTLQTSSPLTNTLEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNLSQARVMSSAALTGGTSIGLQSMVQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSLTGSGALTGAAQVLPNSGLSSFSSATSNVAGNSNIGISQPMGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPGDMVVFKPQMSSQQQLQLQQQQMQPQLQQQQQQQNPQLQQQQLPHLQQQQLPQLQQQQQQQQLPQLQQQQLSQLQQQQQQQKQQQQQQQQSQHPQMQQQQLSQQQQMVGSGMGPAYVQGPG
Length799
PositionUnknown
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.04
Grand average of hydropathy-0.316
Instability index61.61
Isoelectric point8.64
Molecular weight85384.66
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12992
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     163.19|      25|      25|     703|     727|       1
---------------------------------------------------------------------------
  526-  562 (29.52/ 6.37)	PGMSQQVQsgmqtlgvsnssaA.SM.P.LSQQTSSALQSA
  703-  727 (56.20/18.35)	PQLQQQQQ.............Q.QN.PQLQQQQLPHLQQQ
  730-  749 (32.52/ 7.71)	PQLQQQQQ.............Q.QQlPQLQQQQL......
  760-  783 (44.95/13.30)	KQQQQQQQ.............QsQH.PQMQQQQLS..QQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     245.12|      55|      56|     380|     434|       2
---------------------------------------------------------------------------
  239-  271 (32.51/11.56)	.............................G.........LPSL..AtnQSPVKM..DMASV....TS..........vTG........PPPSS............VNGS
  291-  377 (51.41/22.84)	EPTTITSMATGPAFSHVPSV.........PrapsqaiptLQT......SSPLTN..TLEGM....TSgdnmqelkpsvSGMtqpSRPVPPAAAnvnilnnlsqarVMS.
  378-  422 (73.33/35.93)	..........SAALTGGTSI.........G.........LQSM..V..QTPVAM..HMSNM....IS...........SGM...ASSVPPAHT............VLSS
  423-  467 (44.76/18.88)	GQPTMTSLTGSGALTGAAQV.....lpnsG.........LSSFssA..TSNVAG..N.SNI..................GI...S........................
  468-  524 (43.11/17.89)	.QP.MGNVQ..GAVNIGQSVpgmsqgnhsG.........TQ.M..M..QSGVGMsqNMSALgqstVS...........SGN...GTMIP....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.40|      37|      50|     590|     634|       6
---------------------------------------------------------------------------
  590-  634 (55.48/53.76)	GYRSASASETLAA..HWPQ.TM......QIVRLISQdhmnnkQYVGkaDFLVFR
  640-  685 (51.93/31.31)	GFLGQLQEKKLCAviQLPQqTLllsvsdKACRLIGM......LFPG..DMVVFK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12992 with Med25 domain of Kingdom Viridiplantae
Unable to open file!