<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12987

Description U-box domain-containing protein 34-like
SequenceMEETSGYTAIAVDKDRNSQLAAKWAVDHLLKPGSKCFFVHVLKSLHPQEFEAIPMEGRPPSEAEMQLYFLSCRGYCSRKGIESHEMVLHGIDVPSTLVDYINNNDIGNIIVGASSRNVLTRKLRNPDVPTSLLKLAPESCGVYVILKGKVQASRLASRSQKSEDSKSTNPHKSQHLKALLSTRTYDNSEIEDISRSRSTSSHFNGSSSLTRTSSQRTVSSSKGRSSGITSDRVNDSFQVRPCENLKTNKQVTSPKASKRSKIPESLHRISITERTDFSGPPSCRSTDISSHGSESTAYNSSSLASLTPRGLEVEMKRLRKELKRSMDMFKSVCEEAVVAKDKGLFFSQLKELQEWKEAEERKLEEVKLSEEAAVALAEAEREKTKAAMDAAQTAQRLADMEARKRKLAELKANQEEEEKQRALDKLVNNKAAYRKYTLDDIEAATDYFASAHKIGEGGYGPVFKATLDHTAVAIKILRPDISQGQKQFQQEVEVLSCMRHPHLVLLIGACPEYGCLVYEYMENGSLEDRLFRKDNTPSIPWKIRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDKNYVSKISDVGLSRLVPASIADGVAQYRLTAARGTFCYIDPEYQQTGMLGVKSDLYSLGVVLLQLLTSKPPVGLTVHIQEAIEKGTFAEMLDPTVPDWPVEEALSLAKLALQCCELRKRDRPDLDSVVLPELNRLRNLELQHEANNSEIQHEANNSEKVASKPPLHISVPEIRSQENQVS
Length759
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.05
Grand average of hydropathy-0.502
Instability index45.69
Isoelectric point7.86
Molecular weight84669.20
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12987
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     178.07|      52|      59|     173|     230|       1
---------------------------------------------------------------------------
  112-  204 (50.62/37.28)	GASSrnvLTRKL.RNPDVPTSllklAPESCGvyvILKgkvqasrlasrsqksedskstnphkSqhlkalL..STRTYDNSEIEDISRSRSTSSHFN
  205-  261 (78.15/44.32)	GSSS...LTRTS.SQRTVSSS....KGRSSG...ITS....................drvndS......F..QVRPCENLKTNKQVTSPKASKRSK
  262-  299 (49.29/25.34)	IPES...LHRISiTERT..........DFSG.......................................ppSCRS......TDISSHGSESTAYN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.36|      50|      60|     319|     378|       2
---------------------------------------------------------------------------
  319-  373 (65.78/64.85)	RKELKRSMDMFKSVCEEA.VVAKDKGLffSQLKELQEwKEAEERKLEevKLSEEAA
  381-  431 (74.58/42.76)	REKTKAAMDAAQTAQRLAdMEARKRKL..AELKANQE.EEEKQRALD..KLVNNKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.98|      35|      61|     567|     602|       3
---------------------------------------------------------------------------
  567-  602 (53.72/37.66)	VHRDLKPANILLDKNYVSKiSDVGLSRLVPASIADG
  630-  664 (57.26/35.82)	VKSDLYSLGVVLLQLLTSK.PPVGLTVHIQEAIEKG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12987 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LQHEANNSEIQHEANNSEKVASKPPLHISVPEIRS
2) NSEIEDISRSRSTSSHFNGSSSLTRTSSQRTVSSSKGRSSGITSDRVNDSFQVRPCENLKTNKQVTSPKASKRSKIPESLHRISITERTDFSGPPSCRSTDISSHGSESTAYNSSSLASL
719
187
753
306










Molecular Recognition Features






MoRF SequenceStartStop




1) KIPESLHRI
261
269