<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12986

Description pre-mRNA-processing protein 40A-like isoform X1
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQVQYGQTNRPLTSEPPQSHQSAPPLNSHMPGVGAPGVPPSSYGFAPSSFGLPQNNVSAPSQFHPMSQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEDKTRIKEAMKTGKVTMVYSWTFEDFKTAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSNWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQDKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRTKKDETDSENLDISDSYGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length1026
PositionUnknown
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-1.165
Instability index59.11
Isoelectric point6.72
Molecular weight116553.75
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12986
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     153.52|      28|      30|     863|     890|       1
---------------------------------------------------------------------------
  837-  861 (27.45/ 7.94)	................LFEESQE....YRSIAEES.......FRREIFEEYI
  862-  889 (44.29/16.50)	T..............HLQDKAKE...KERKREEEK.......AKKEKDREEK
  890-  917 (30.92/ 9.70)	D..............KRKEKEKErkeKEREREREK.......GK...DRTKK
  918-  966 (24.75/ 6.57)	DetdsenldisdsygHKEEKKKE...KEKDRKHRKrhaaddgSSDKDDREES
  967-  996 (26.10/ 7.25)	K..........ksrrHGSD..RK...KSRKHAHSP.......DSDSESRHRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     245.22|      36|      38|     216|     251|       2
---------------------------------------------------------------------------
  117-  156 (25.23/ 7.46)	..P.....QS.....HQSAPplnshmpgvgapgvpPSSYGFA....PSSFGLPQNN
  163-  191 (40.17/15.84)	FHP.....MSQVHAPVAPVA...............GQPWL.......STGNQNVSL
  192-  215 (27.58/ 8.77)	ATP...tqHTSQQPPPSSAD...............TNA............NVP..S
  216-  251 (64.72/29.62)	LTP.....QSSDWQEHTSAD...............GRRYYYNKRTRQSSWEKPLEL
  252-  292 (52.23/22.61)	MTPieradASTVWKEFTTPE...............GRKYYHNKVTKESKWTIPEEL
  297-  329 (35.28/13.10)	EQA.....QAAASQGTPSGS...............GVAPQAPVATAVSAAETP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.01|      14|      17|      24|      37|       3
---------------------------------------------------------------------------
   29-   48 (20.66/ 8.43)	PLSSQFRPVvptqqgQHFVP
   80-   91 (22.25/ 9.67)	PM.QQF.PP......RPNQP
  125-  138 (20.09/ 7.99)	PLNSHMPGV......GAPGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      97.41|      22|      22|     525|     546|       4
---------------------------------------------------------------------------
  508-  544 (24.50/ 8.70)	GErkqafneylgqrkklEAEERRMRQKKAREEFTKML
  613-  640 (21.51/ 6.83)	ES.........cdfikaNSQWRKVQDRLEDDERCSRL
  667-  686 (20.55/ 6.23)	.................QKEQLRRAERKNRDAFRKLM
  799-  819 (30.84/12.65)	EK...............EEKEAKKRQRLADD.FTRLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.58|      21|      36|     345|     365|       5
---------------------------------------------------------------------------
  356-  381 (22.96/12.06)	PTSVSGPTTGPVaqsaamSATGVQL..P...
  414-  434 (25.91/14.69)	ETTSTQDTMHFA......DGASAQD..I..E
  435-  459 (21.71/10.94)	EAKKGMATAGKV......NMTPVEEkvPddE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.62|      14|      25|      66|      79|       6
---------------------------------------------------------------------------
   66-   79 (27.30/19.62)	GM..PAVQNQQMQFSQ
   92-  107 (22.33/14.51)	GLstPSQQPIQVQYGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     131.02|      27|      65|     577|     603|       7
---------------------------------------------------------------------------
  510-  557 (18.43/ 6.76)	.RKQAFNEYLG..QRKKleaeerrmrqkkareeftkmleesKELTSSMRWS
  558-  576 (29.43/15.24)	KAQSLFEN...D....E........................R.FKAVERAR
  577-  603 (47.45/29.13)	DREDLFENYIVDLERKE........................REYAAEEKRR
  644-  665 (35.71/20.08)	DRLLIFQDYIHDLEKEE.............................EEKKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.31|      10|      36|     346|     355|       8
---------------------------------------------------------------------------
  346-  355 (20.12/11.91)	VSVTPV.ANPS
  383-  393 (15.19/ 7.20)	VSVTPVpAVPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.78|      31|     276|     468|     498|       9
---------------------------------------------------------------------------
  468-  498 (52.03/30.89)	EAKNAFKSLLESANVQ...SDWTWEQTMREIIND
  709-  732 (31.91/16.24)	......KELPQYLAVA...SN.TSGSTPKDLFED
  743-  775 (42.85/24.20)	EDKTRIKEAMKTGKVTmvyS.WTFEDFKTAISED
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12986 with Med35 domain of Kingdom Viridiplantae
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