Description | pre-mRNA-processing protein 40A-like isoform X2 |
Sequence | MANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPMSQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEDKTRIKEAMKTGKVTMVYSWTFEDFKTAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSNWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQDKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRTKKDETDSENLDISDSYGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ |
Length | 984 |
Position | Unknown |
Organism | Gossypium hirsutum (Upland cotton) (Gossypium mexicanum) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium. |
Aromaticity | 0.07 |
Grand average of hydropathy | -1.180 |
Instability index | 58.10 |
Isoelectric point | 6.69 |
Molecular weight | 112246.08 |
Publications | PubMed=25893780 |
Annotated function |
|
GO - Cellular Component | |
GO - Biological Function | |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro |
Binary Interactions |
Repeats | >MDP12985 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.32| 15| 17| 92| 106| 1 --------------------------------------------------------------------------- 92- 106 (29.13/13.59) GLSTPSQQPIQFAPS 148- 162 (25.19/10.79) SLATPTQHTSQQPPP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 7| 493.56| 65| 65| 497| 561| 2 --------------------------------------------------------------------------- 421- 483 (78.55/46.10) YANKLEA....K....NAFKSLLE...SANVQSDWTWEQTMREIINDKRYG........AL...KTLGERKQAFNEYLG...................Q...........R.K.KLE 484- 553 (89.39/53.58) ..AEERRmrqkK.areEFTKMLEE...SKELTSSMRWSKAQSLFENDERFK........AV...ERARDREDLFENYIVD..........L.......E...........R.K.ERE 554- 620 (90.33/54.23) YAAEEKR....R.niaEYRKFLES...CDFIKANSQWRKVQDRLEDDERCS........RL...EKI.DRLLIFQDYIHD..........L.......E...........K.E.EEE 630- 698 (50.47/26.70) RRAERKN....R...dAFRKLMEEhvaDGTLTAKTYW........RDYCLKvkelpqylAVasnTSGSTPKDLFEDVAEE..........L.......................DKQ 699- 759 (58.61/32.33) Y.HEDKT....R........IKEA...MKTGKVTMVYSWT...FE.D..FK..............TAIS.EDVGSSSISDinlklvydelL.......E...........RaK.EKE 760- 836 (72.49/41.91) EKEAKKR....QrladDFTRLLHT...YKEITASSNWEESKPLFEESQEYR........SI...AEESFRREIFEEYITH..........LqdkakekE...........R.KrEEE 837- 900 (53.71/28.94) KAKKEKD....R...eEKDKRKEK...EKE.....RKEKER....EREREK........GK...DRTKKDETDSEN..............L.......DisdsyghkeekK.K.EKE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 74.34| 24| 24| 265| 288| 3 --------------------------------------------------------------------------- 265- 285 (33.19/17.67) ................TP.S.GSGV.APQAPVATAVS.AAE 286- 319 (18.95/ 7.05) TPTtaipvssntlqdsSPvS.VTPV.ANPSP..TSVS.G.. 344- 372 (22.20/ 9.47) TPV...........paVP.SrGSTVpAPSVGANTAVTrSSE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 123.03| 23| 23| 34| 56| 4 --------------------------------------------------------------------------- 14- 34 (31.60/19.72) ...........WPPAVGSMGPQSYGSPLSSQF 35- 54 (33.28/21.26) ............RPVVPTQQGQHFVPAASQQF 55- 84 (32.16/20.23) RPvgqvpspniGMPAVQNQQMQFSQPM..QQF 122- 146 (25.99/14.59) HP.....msqvHAPVAPV.AGQPWLSTGNQN. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 136.73| 36| 38| 174| 209| 5 --------------------------------------------------------------------------- 174- 209 (71.52/40.33) LTP.....QSSDWQEHTSADGRRYYYNKRTRQSSWEKPLEL 210- 250 (65.21/36.14) MTPieradASTVWKEFTTPEGRKYYHNKVTKESKWTIPEEL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 49.48| 16| 24| 923| 939| 6 --------------------------------------------------------------------------- 923- 939 (25.56/15.02) ESKKsRRHGSD.RKKSRK 949- 965 (23.92/ 9.82) ESRH.RKHKRDhRDGSRR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 27.52| 8| 30| 909| 919| 7 --------------------------------------------------------------------------- 909- 919 (10.46/12.23) HAaddGSSDKD 940- 947 (17.06/ 8.33) HA...HSPDSD --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GYEELED 2) KDDREESKKSRRH 3) KEKDRKHRKRHAADD 4) RHRKHKRDHR 5) RKKSRKH | 968 918 899 951 934 | 974 930 913 960 940 |
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