<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12985

Description pre-mRNA-processing protein 40A-like isoform X2
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPMSQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEDKTRIKEAMKTGKVTMVYSWTFEDFKTAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSNWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQDKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRTKKDETDSENLDISDSYGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length984
PositionUnknown
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-1.180
Instability index58.10
Isoelectric point6.69
Molecular weight112246.08
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12985
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.32|      15|      17|      92|     106|       1
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   92-  106 (29.13/13.59)	GLSTPSQQPIQFAPS
  148-  162 (25.19/10.79)	SLATPTQHTSQQPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     493.56|      65|      65|     497|     561|       2
---------------------------------------------------------------------------
  421-  483 (78.55/46.10)	YANKLEA....K....NAFKSLLE...SANVQSDWTWEQTMREIINDKRYG........AL...KTLGERKQAFNEYLG...................Q...........R.K.KLE
  484-  553 (89.39/53.58)	..AEERRmrqkK.areEFTKMLEE...SKELTSSMRWSKAQSLFENDERFK........AV...ERARDREDLFENYIVD..........L.......E...........R.K.ERE
  554-  620 (90.33/54.23)	YAAEEKR....R.niaEYRKFLES...CDFIKANSQWRKVQDRLEDDERCS........RL...EKI.DRLLIFQDYIHD..........L.......E...........K.E.EEE
  630-  698 (50.47/26.70)	RRAERKN....R...dAFRKLMEEhvaDGTLTAKTYW........RDYCLKvkelpqylAVasnTSGSTPKDLFEDVAEE..........L.......................DKQ
  699-  759 (58.61/32.33)	Y.HEDKT....R........IKEA...MKTGKVTMVYSWT...FE.D..FK..............TAIS.EDVGSSSISDinlklvydelL.......E...........RaK.EKE
  760-  836 (72.49/41.91)	EKEAKKR....QrladDFTRLLHT...YKEITASSNWEESKPLFEESQEYR........SI...AEESFRREIFEEYITH..........LqdkakekE...........R.KrEEE
  837-  900 (53.71/28.94)	KAKKEKD....R...eEKDKRKEK...EKE.....RKEKER....EREREK........GK...DRTKKDETDSEN..............L.......DisdsyghkeekK.K.EKE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.34|      24|      24|     265|     288|       3
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  265-  285 (33.19/17.67)	................TP.S.GSGV.APQAPVATAVS.AAE
  286-  319 (18.95/ 7.05)	TPTtaipvssntlqdsSPvS.VTPV.ANPSP..TSVS.G..
  344-  372 (22.20/ 9.47)	TPV...........paVP.SrGSTVpAPSVGANTAVTrSSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     123.03|      23|      23|      34|      56|       4
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   14-   34 (31.60/19.72)	...........WPPAVGSMGPQSYGSPLSSQF
   35-   54 (33.28/21.26)	............RPVVPTQQGQHFVPAASQQF
   55-   84 (32.16/20.23)	RPvgqvpspniGMPAVQNQQMQFSQPM..QQF
  122-  146 (25.99/14.59)	HP.....msqvHAPVAPV.AGQPWLSTGNQN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.73|      36|      38|     174|     209|       5
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  174-  209 (71.52/40.33)	LTP.....QSSDWQEHTSADGRRYYYNKRTRQSSWEKPLEL
  210-  250 (65.21/36.14)	MTPieradASTVWKEFTTPEGRKYYHNKVTKESKWTIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.48|      16|      24|     923|     939|       6
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  923-  939 (25.56/15.02)	ESKKsRRHGSD.RKKSRK
  949-  965 (23.92/ 9.82)	ESRH.RKHKRDhRDGSRR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      27.52|       8|      30|     909|     919|       7
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  909-  919 (10.46/12.23)	HAaddGSSDKD
  940-  947 (17.06/ 8.33)	HA...HSPDSD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12985 with Med35 domain of Kingdom Viridiplantae
Unable to open file!