<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12979

Description probable mediator of RNA polymerase II transcription subunit 26b
SequenceMAMKGWAIEQWRGYFRTANSDIFDIIDHAIMVAALDCPKEFRLRRDRIAEKLFTCKLTRCSGCDRVELVLPEYEDDDNPTGCHGSFKREDEEEEDGCGFFEAGGSKESKANSSRDDPLMNQIASNYRYGEAEALTDEIEEESMIVGEVFRIKEILHNCQDEPNSVLFESLRKLQLMDLTVDILEATGIGKAVNRVRKHSSKQIRHLAQTLIDVWKALVDEWVSATKAVAGVTPESMNPSVDEEVDEEEEGLPSPPLDMDALFAQPTAMELSQFFDGMDDDGNPGSSGDFVRNNGRKPSEENRNLSKRKPQTSSEANPALKNDKSQQMKRQEPVTKPNNKPSTTNVGSGKPPKHNIEPKASNESNSLRKPDKMAVPKKPLRSQQDKLKPSDEDAVQQKLEATKRKLQERYQQVENAKRRRTIQVMELHDLPKQGSGHKNPHFKHGNHNRQWANGRR
Length455
PositionUnknown
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.05
Grand average of hydropathy-0.976
Instability index51.51
Isoelectric point5.80
Molecular weight51509.03
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12979
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.94|      16|      16|     337|     352|       1
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  337-  352 (29.65/18.02)	NNKPSTTNVGSG..KPPK
  354-  371 (23.29/12.65)	NIEPKASNESNSlrKPDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.90|      38|     202|      74|     117|       3
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   74-  117 (61.37/42.02)	EDDDNPtGCHGSFKRED..EEEEDGCGFfeaggSKESKANSSRDDP
  278-  317 (64.53/31.10)	DDDGNP.GSSGDFVRNNgrKPSEENRNL.....SKRKPQTSSEANP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.23|      14|      18|     373|     387|       4
---------------------------------------------------------------------------
  373-  387 (18.87/16.36)	AVPKKpLRSQQDKLK
  393-  406 (22.36/13.21)	AVQQK.LEATKRKLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12979 with Med26 domain of Kingdom Viridiplantae
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