<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12964

Description mediator of RNA polymerase II transcription subunit 25-like isoform X3
SequenceMAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVENSEAQTESRLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKQNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGLPSLATNQSPVKMDMASVTSVTGPPPSSVNGSMVGRLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSVPRAPSQAIPTLQTSSPLTNTLEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNLSQARVMSSAALTGGTSIGLQSMVQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSLTGSGALTGAAQVLPNSGLSSFSSATSNVAGNSNIGISQPMGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQALGVSNSSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPGLHSSNTPPGLHPSLDKPKKLNEMDMVVFKPQMSSQQQLQLQQQQMQPQLQQQQQQQNPQLQQQQLPHLQQQQLPQLQQQQQQQQLPQLQQQQLSQLQQQQQQQKQQQQQQQQSQHPQMQQQQLSQQQQMVGSGMGPAYVQGPG
Length796
PositionUnknown
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.04
Grand average of hydropathy-0.346
Instability index61.47
Isoelectric point8.85
Molecular weight85045.39
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12964
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.10|      23|      25|     700|     724|       1
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  700-  723 (41.79/14.14)	...PQLQQQQQQ.QN.PQLQQQQLPhlQQ
  724-  746 (31.94/ 6.29)	QqlPQLQQQQQQ.QQlPQLQQQQL.....
  756-  779 (46.37/12.43)	Q..KQQQQQQQQsQH.PQMQQQQLS..QQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     462.79|     102|     104|     275|     378|       2
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  140-  231 (117.10/45.35)	...LSDAETVARSFAQCSVSLSVICP...........KQ..LAKLKAIYSAGKQNPRAADPPVDNVknsQFLVLISENFMEGRAALSRS....GLPSLAtnQSP.....VKMDMASV
  275-  378 (176.60/75.30)	GPAFSHVPSVPRAPSQAIPTLQTSSPLTNTleGMTSGDN..MQELKPSVSGMTQPSRPVPPAAANV...NILNNLSQARVMSSAALTGGT.SIGLQSMV..QTP.....VAMHMSNM
  382-  454 (105.52/40.21)	GMA.SSVPPAHTVLSSGQPTM.TS..LTGS..GALTG.A..AQVL.PN.SGLSSFSSATSNVAGNS...NI..GISQP..MGN..VQGAV.NIG.......................
  455-  513 (63.57/21.59)	...............QSVP.............GMSQGNHsgTQMMQSGV.GMSQ...................N......MS..ALGQSTvSSGNGTMI..PTPgmsqqVQSGMQAL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.96|      16|      29|     641|     656|       4
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  642-  668 (22.27/ 9.97)	KACRLIGM...LF.PGLHSsntppglhpslD
  669-  688 (18.68/ 7.30)	KPKKLNEMdmvVFkPQMSS...........Q
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12964 with Med25 domain of Kingdom Viridiplantae
Unable to open file!