<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12960

Description pre-mRNA-processing protein 40C-like isoform X1
SequenceMQPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDMLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTLGHPVSVPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQVYPPYTSLPSMVSSPQGYWMQHPPMGGFPRPPFVPYPTVYPGPFPSTSSGMPLPAPSSDSQPPGFRPLGMSPFAPSAAALANQSLAILTGFPPQGIDNRKLVHDVTTKVESAGNEQSDVWTAHKTDTGVVYYYNALTGESTYEKPAGFKGEPDQVTVQPTPVSVEQLAGTDWALVTTNDGKKYYYNSKTKISSWQIPNEVTELRKKQDSEVSKENAVSVPNIDVVAEKGSTPISLSAPAVNTGGRDAMPLRTSVVPGSSSALDLIKKKLQDPGVPSSSPVPVMPVTATHELNGLRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIGHDTNYQTFKRKWGSDPRFEALDRKDRELLLNERVLLLKRAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKCVKHEDREVLFNEYISELKAIEEKAERKDKVKKEEEEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASFQALLVETIKDSQASWTESKPKLEKDPQGRAANPDLDSSDMEKLFREHIKMLFERCVNDFRALLAKVITQDAAAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKEREALWRRYAEDMLRKQKLALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
Length886
PositionUnknown
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.743
Instability index55.89
Isoelectric point8.90
Molecular weight97872.05
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12960
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     271.13|      50|      58|       4|      53|       1
---------------------------------------------------------------------------
    4-   42 (53.51/18.28)	.................PLPVPQ.GA...LSSSASF....SFTPNP..QLVQNAQIQPSKSDMLAT
   43-  101 (68.01/24.95)	GTQAMAASSPStvsqsgPLPVHN.SSeftMNASTTP....SFAPVT..SRMPTTPPFPMSSGSSGT
  103-  146 (35.88/10.17)	GTLGHPVSVPS............iQM...ITASAAVdspsSAVPGPgaPVSLNPAVQQQ.......
  147-  195 (81.09/30.97)	.VYPPYTSLPS......MVSSPQ.GY...WMQHPPM....GGFPRP..PFVPYPTVYPGPFPSTSS
  196-  231 (32.65/ 8.69)	G...MPLPAPS.sdsqpPGFRPL.GM...SPFAPSA....AALANQ..SL................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     264.09|      58|      58|     692|     749|       2
---------------------------------------------------------------------------
  482-  545 (45.66/19.24)	................KEECIMQFKEMLKERG.V.APFSKWEKE.LPKI............................................V..FD.PRfkaipshsaRR.SLfehyvktR.AEEERKEK...
  546-  600 (44.38/18.52)	....RAA.........QKAAIEGFKQLLDE........AS......EDI.................................ghdtnyqtfkrK..WG.SD.........PRfEA.......L.DRKDRELLLNE
  601-  712 (53.48/23.62)	RVLLLKRaaeekaraiRAAAASSFKSMLKEKG.DiNVNSRWSRV.KDSLrddprykcvkhedrevlfneyiselkaieekaerkdkvkkeeeeK..LK.ER.........ER.EL.......R.KRKEREEQEME
  713-  768 (71.76/33.85)	RVRLKVR.........RKEAVASFQALLVETI.K.DSQASWTES.KPK..................................................lEK.........DP.QG.......RaANPDLDSSDME
  772-  835 (48.81/21.00)	REHIKML.........FERCVNDFRALLAKVItQ.DAAAQETEGgKTAL......................................nswstaKrlLK.PD.........PR.YN.......KmPRKERE.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.43|      26|      50|     266|     291|       3
---------------------------------------------------------------------------
  266-  291 (49.49/35.56)	WTAHKTDTGVVYYYNALTGESTYEKP
  318-  343 (49.93/35.94)	WALVTTNDGKKYYYNSKTKISSWQIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.67|      14|      15|     447|     461|       7
---------------------------------------------------------------------------
  447-  461 (19.78/16.73)	GLQSESNKDKlKDAN
  464-  477 (23.88/14.99)	GSISDSSSDS.EDAD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12960 with Med35 domain of Kingdom Viridiplantae
Unable to open file!