<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12958
Description |
ATP-dependent DNA helicase Q-like 4A isoform X1 |
Sequence | MPDQSNSVESHKCYDKLPKVNWLQHFDAHDKFACQKKFMCTNFLFSLEGQKPQGTMFARLTSRQIQNSQIFQHTQVEKAWQILSSLPASCRTYLKPGTSAPVKTSTDEISHNRRGRSTLVEPSGMKWSEHMHVHPNISETDGKVNGFGRCMTSSFPSNNANTMESGNNLRGNSGITTSMFSHSNSKVSGGSLKNQTFHGVQQEQSAEVLASEIDDDDLLKDIDVDQIVSEHYQSTCTPQPSVSKFPPITPSVDKNAFAGQETCLPPELCSNCSHGCKLGHCPEAASHVQEMKDMLIAVSNELLDNATNLSSEQIEKLRQDRLQLNKQIQQLEKYISDVERQKSNFSASTATLSFQYGTPQTTSLRPNPIQFDTQVHSRNEPNGYDNWNSPTVPFSSVNSFGVPSGPIEREPYIPQIIDVNYIEGSNDQKWSSRDFPWTRKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANIDWSEQQEILRELTSDYCKYKLLYVTPEKVARSDVLLRHLNILNSRDLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPKTPVLALTATATASVKEDVVQALGLINCIIFRQSFNRPNLWYSVIPKTKKCVEDIDKFIKENHFDECGIIYCLSRMDCEKVSEKLQEYGHKAAFYHGNMDPAQRAFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCLLYYSYSDYIRVKHMISQGAAEQSPLITGHSRFNNSGRILETNTENLLRMVSYCENDVDCRRLLQLLHFGEKFDSTHCQKTCDNCCKTRSSVDKDVTNIAKQLVELVKLTGQQFSSSHILEVYRGSLSQFVKKHRHETLSLHGVGKHLAKGEASRIIHHLVVEEYLLEDVKKSDIYGSVSSVLKVNESQVKNLFSGRQAIIIRFPSTVKVGKLSKPEVTPAKGSLTTSGKLSPPRVDTPAQSQSIVDLNLSAKLYSALRMLRTILVKEAGEGVMAYHIFGNATLQHISKRVPRTKEELLEINGIGKAKILKYGDRLLETIEATIKEHYKTDKINSGSSNDSNDSAKRRRNTNANIDNNDDFSRSTGRSKRRTVERQDKDGNSDNNHQYPADENDLDFDDLDYVYDVESKENRPQVEVNINGRMLPSWPRT |
Length | 1203 |
Position | Unknown |
Organism | Gossypium hirsutum (Upland cotton) (Gossypium mexicanum) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.555 |
Instability index | 48.92 |
Isoelectric point | 7.98 |
Molecular weight | 135505.39 |
Publications | PubMed=25893780
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Function
Annotated function |
|
GO - Cellular Component | chromosome GO:0005694 IBA:GO_Central
cytoplasm GO:0005737 IBA:GO_Central
nucleus GO:0005634 IBA:GO_Central
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GO - Biological Function | 3'-5' DNA helicase activity GO:0043138 IBA:GO_Central
ATP binding GO:0005524 IEA:UniProtKB-KW
four-way junction helicase activity GO:0009378 IBA:GO_Central
nucleic acid binding GO:0003676 IEA:InterPro
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GO - Biological Process | DNA duplex unwinding GO:0032508 IBA:GO_Central
DNA recombination GO:0006310 IBA:GO_Central
DNA repair GO:0006281 IBA:GO_Central
DNA unwinding involved in DNA replication GO:0006268 IBA:GO_Central
double-strand break repair via homologous recombination GO:0000724 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP12958
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 218.38| 70| 157| 879| 954| 1
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879- 954 (111.36/116.80) LVKLTGQQFSSSHIL.EVYRGSLSQFVKKHRHETLSLHGVGKHLAKGEASRIIHHL...VVEEYlledvkKSDIYGSVSS
1038- 1111 (107.02/96.46) LVKEAGEGVMAYHIFgNATLQHISKRVPRTKEELLEINGIGKAKILKYGDRLLETIeatIKEHY......KTDKINSGSS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 144.31| 31| 156| 230| 260| 2
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230- 260 (56.41/28.11) EHYQSTC.......TPQPSVSKFP.PI...TPSVDKNAFAGQ
344- 384 (39.68/17.80) NFSASTAtlsfqygTPQTTSLRPN.PIqfdTQVHSRNEPNGY
385- 415 (48.23/23.07) DNWNSPT.......VPFSSVNSFGvPS...GP.IEREPYIPQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 57.17| 15| 134| 442| 457| 4
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442- 457 (24.58/18.23) EANNKKVFGnHSFRPN
582- 596 (32.59/19.61) EAHCVSQWG.HDFRPD
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