<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12953

Description pre-mRNA-processing protein 40C-like isoform X2
SequenceMQPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMTASSPSTVSQSGPLPVNSSSGFTMNASTTRSFAPVTSRIPTTPPFPMSSGSSGTSGAPGHPGSVPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQVYPPYTSLPSMVSSPQGYWMQHPPLGGFPRPPFVPYPTVYPGPFPSTSSGMPLPAPSSDSQPPGVRPLGMSPFAPSAAALANQSLAIQTGFPPQGIDNRKLGHDVSTRVESAVNEQSDVWTAHKTDTGVVYYYNALTGESSYEKPAGFKGEPDQVTVQPTPVSVEQLAGTDWALVTTNDGKKYYYNSKTKISSWQIPNEVTELRKKQDSEVSKENAVPVPNIDVVAEKGSTPISLSAPAVNTGGRDAMPLRTSVVPGSSSALDLIKKKLQDPGVPSSSPVPVMPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFRQLLDEASEDIDHDTNYQTFKRQWGSDPRFEALDRKDRGLLLNERVLLLKRAAEEKARVIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKCVKHEDREVLFDEYISELKAIEEKAERKDKVKKEEEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASFQALLVETIKDSQASWTESKPKLEKDPQGRAVNPDLDSSDMEKLFREHIKMLFERCVNDFRALLAEVITQDAAAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKEREALWRRYAEDMLRKQKLALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
Length885
PositionUnknown
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.754
Instability index56.00
Isoelectric point8.85
Molecular weight97578.42
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12953
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     298.64|      50|      58|       4|      53|       1
---------------------------------------------------------------------------
    4-   51 (70.16/33.18)	........PLPV............PQG...AL.SSSASFSFTPNPQLVQNAQIQPSKSDTLAT.GTQAMTASS
   52-  111 (63.28/29.15)	PStvsqsgPLPV............NSSsgfTM.NASTTRSFAPVTSRIPTTPPFPMSSGSSGTsGAPGHPGSV
  112-  161 (47.20/19.72)	PS..........iqmitasaavdsPSS...AVpGPGAPVSLNPA...VQQ.QVYPP.....YT.SLPSMVSSP
  162-  201 (62.00/28.40)	.........................QG...YW.MQHPPLGGFPRPPFVPYPTVYPGPFPSTSS.G...MPLPA
  202-  253 (56.00/24.88)	PS.sdsqpPGVR............PLG...MS.PFAPSAAALANQSLAIQTGFPPQGIDNRKL.GHDVST...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     397.21|      68|      68|     546|     613|       2
---------------------------------------------------------------------------
  514-  560 (46.42/23.31)	..........................DPRFKA....IpSHSARRSLFEHYV.K..TRAEEERkeK..RAAQKAA.IEGFRQLL
  561-  628 (107.79/63.85)	DEASEDIDHD....TNYQTFKRQWGSDPRFEA....L.DRKDRGLLLNERV.LLLKRAAEEK..A..RVIRAAA.ASSFKSML
  629-  694 (84.90/48.73)	KE.KGDINVN....SRWSRVKDSLRDDPRYKC....V.KHEDREVLFDEYI.SELK.AIEEK..AerKDKVKKE.EEKLKE..
  695-  730 (38.07/17.80)	..........................RER.EL....R.KRKEREEQEMERV..........R..L..KVRRKEA.VASFQALL
  731-  789 (65.33/35.80)	VETIK..DSQ....ASWTESKPKLEKDPQGRAvnpdL.DSSDMEKLFREHIkMLFER.................cVNDFRALL
  796-  843 (54.70/28.78)	DAAAQETEGGktalNSWSTAKRLLKPDPRYNK....M.PRK.......ERE.ALWRRYAED......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.11|      45|      51|     266|     312|       3
---------------------------------------------------------------------------
  266-  312 (77.06/56.13)	WTAHKTDTGVVYYYNALTGESSYEKPAGFKGEPDQVtvQPTPVSVEQ
  318-  361 (73.51/47.44)	WALVTTNDGKKYYYNSKTKISSWQIPNEVTELRKK...QDSEVSKEN
  370-  400 (43.54/24.88)	VVAEKGSTPI...........SLSAPAVNTGGRDAM...PLRTSV..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12953 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FPSTSSGMPLPAPSSDSQPPGVRPLGMSPF
2) IPNEVTELRKKQDSEVSKENAVPVPNIDVVAEKGSTPISLSAPAVNTGGRDAMPLRTSVVP
3) IQTGFPPQGIDNRKLGHDVSTRVESAVNEQSDVW
4) LIKKKLQDPGVPSSSPVPVMPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQF
5) MQPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMTASSPSTVSQSGPLPVNSSSGFTMNASTTRSFAPVTSRIPTTPPFPMSSGSSGTSGAPGHPGSVPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQ
6) QKLALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
190
342
233
410
1
848
219
402
266
489
146
885










Molecular Recognition Features






MoRF SequenceStartStop




1) ALWRRYA
2) FGRYSS
3) LDLIKKKLQ
835
871
408
841
876
416