<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12929

Description U-box domain-containing protein 33-like isoform X2
SequenceMDRMTDAAETIYVAVGKAVEESEHTLLWALQNLCPTKVCILHVHQPASLCNSSRMNFTATRLHQQDIGKKILDRIMDDYLLICGQKSVEAAKLNIEMDDAGKGIVELIRDQGIKKLVMGAAANKHFSEGMTDLKSEKAQYVELHAPPSCKIWFICGGQLVHRKSLVENGQSNLSSSASSSSYWTVSNKLASSSDSSVSETLGESPDWLEFNEGSGDDKVFENLEQALFIAEKSNQEAFDELDRRLKAEKDALNAVVRQTTLMFVGNNGNNEANEMKSSYIGELRRRKEIEGTLRKQNEELEQVKQQRDEARKIARTHKLLLESRGAKSDHVKVLEAKVSSAMEQLQIYQRERDDLRAKLESTCMSIKDHSTIQEEGSSNVHMQQFFSEFSVAEIHDATEDFDPSFKIAEGAYGSVYRCTLRHTEVAIKVLHQNSLQGPLEFQKEVDILSKLRHPNLVTLIGVCPEIWALIYEYLPNGSLEDRLIPRDNTPPLSWQTRIQIATEICSALIFLHASKPQRMVHGNLKPGNILLDTNFGCKLSDFGVCHVLSSLEKSNNMTDISRKFPYLEPQFLNTRTLTPSSDIYSFGIILLQLITGRPPLSIIEDAQRAVNGNRLNDLLDPSAGDWSYVEAEQLTHLALRCCDTNRSRRPDLASEVYKVLIRNTIGPLSTIHAGSEQLRQPPDSFFCPISKKIMMDPHVAADGFTYELREIRRWLDGGHDTSPCTNIPLAHRILIPNHALRSAILEW
Length747
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.390
Instability index41.76
Isoelectric point5.88
Molecular weight84025.47
Publications
PubMed=25893780

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12929
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.38|      61|      87|     517|     603|       1
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  517-  584 (95.70/119.31)	QRMVHGNLKpgNILLDTNFGcklsDFGVCHV..LSSLEKSNNMTDISRKfPYLEP...QFLNTRTLTPSSDIY
  607-  672 (99.68/61.78)	QRAVNGNRL..NDLLDPSAG....DWSYVEAeqLTHLALRCCDTNRSRR.PDLASevyKVLIRNTIGPLSTIH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.36|      11|      15|     383|     393|       4
---------------------------------------------------------------------------
  383-  393 (19.42/12.55)	QQFFSEFSVAE
  399-  409 (19.94/13.07)	EDFDPSFKIAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.94|      12|      15|     216|     227|       7
---------------------------------------------------------------------------
  216-  227 (19.16/ 9.98)	DDKVFENLEQAL
  234-  245 (19.78/10.48)	NQEAFDELDRRL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12929 with Med32 domain of Kingdom Viridiplantae
Unable to open file!