<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12924

Description U-box domain-containing protein 35-like
SequenceMARRNGERKEHSAMVAVGIDKDKGSQYALKWTVDHLLSKGQSINLVHVKTKPSSIPTPSGLLTNISKVNDDVAKAYMQQVDNQAKEVFLPFRCFCSRKDITSNEIILEDTDIAKALIDYVSSSSIEILVLGAPTKGGFIRFRSTELTTTVSKGAPNYCTVYVIGKGKISSVRSASAPPPARHHPPAPQPQQPPPSIIPEITESPSAQALFPRYRGAPSRSQHPPRNMYEDLEMKSPFTRPRNKYEPSVPESDISFVSSGRPSTDNMSSLHDNMDFGTQRLSISSEYDSISLGSSYSGNRSIDFSSQYESSSTSHESGRTSWSSQNMDDVEAEMRRLKQELKQTMEMYSAACKEALSAKQRAKELQSWKLQEEQKIEEARLAEEAALSLAEKEKAKCQVAIEAAQAAQLIAELEAQKRKIVEKNANKEADDRKLAINNFGHDLRYRKYTIQEIETATDLFSPSRKIGEGGYGPVYHCNLDHTPVAIKVLRPDAAQGQLQFQQEVEVLCCIRHPNMVLLLGACPEYCCLVYEYMANGSLEDRLFRRNNSPVLPWQVRFRIAAEIATGLLFLHQTKPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQIITAKPPMGLTHHVENAIENGNFAGILDPAVHDWPREETLIFAKLALKCSELRRKDRPDLGRVVLPELDKLRTLADEKMPFIKIGGSAGTSPNNSHVSTSSIQDGHDNSRSY
Length766
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.480
Instability index51.45
Isoelectric point7.27
Molecular weight85273.79
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12924
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.54|      25|      29|     186|     214|       1
---------------------------------------------------------------------------
  186-  213 (45.17/29.00)	APQPQQPPPSIIPEITESPSAqalF..PR..Y
  216-  244 (40.37/15.98)	APSRSQHPPRNMYEDLEMKSP...FtrPRnkY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.26|      12|      19|     270|     288|       2
---------------------------------------------------------------------------
  270-  288 (17.87/29.83)	HDN..MDFgtqrlsiSSEYDS
  296-  309 (18.39/10.69)	SGNrsIDF.......SSQYES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.26|      17|      31|     127|     143|       3
---------------------------------------------------------------------------
  127-  143 (30.27/24.26)	ILVLGAP........TKGGFIRFRS
  149-  173 (21.99/15.26)	TVSKGAPnyctvyviGKGKISSVRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.25|      19|      23|     375|     397|       4
---------------------------------------------------------------------------
  375-  397 (25.61/26.44)	IEEARlaeeAALSLAEKEKAKCQ
  400-  418 (29.64/19.87)	IEAAQ....AAQLIAELEAQKRK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12924 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QALFPRYRGAPSRSQHPPRNMYEDLEMKSPFTRPRNKYEPSVPESDISFVSSGRPSTDNMSSLHDNMDFGTQRLSIS
2) RSASAPPPARHHPPAPQPQQPPPSIIPEITESP
3) SIDFSSQYESSSTSHESGRTSWSSQNMDDVEAEMRRLKQ
207
172
300
283
204
338










Molecular Recognition Features






MoRF SequenceStartStop




NANANA