<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12913

Description U-box domain-containing protein 52-like
SequenceMAPPFSSDDNIPTNTTAVAIDKDKNSPHAVRWAIDHLVVSNPYIILIHVRHRNLGESESDYDINQLFIPFRGYCARKAIQLKEVVLDDADICKALMDYVNKNLINNLVIGGATRNGLSSYLTYRKCKNDISASLIKSAPDFCSVYVISKGKILTMRTAQRPISNTATPPKAPCGMPPPIPSDQIEDDGSRAYYARGGSRNAGADRMSVDNTPKAPMRDRDRQRSSPANLSFDIDSAMRAAQPSSSQDSLSSDSSLPNKRSHGSIDFSDQNLDFSVISGPSTGQLPQSSRDIEAEMRRLKLELKQTMDMYSTACKEALTAKQKANELHQWKMEEARKFEEARLAGEAALAMAEKEKAKCKAAIEAAEAAKRLAEMEAHRRRQAELKAKKEADEKNRALNALAHNDVRYRKYTIEEIEEATENFEAHNKIGEGGYGPVYKGKLDHTPVAIKVLRPDAAQGKKQFQQEVEVLSCMRHPNMVLLLGACPEYGCLVYEYMFNGSLEDRLFRRGNTPPLSWRRRFTIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLTTKSDIYSLGIMLLQIITAKPPMGIAHHVGRAIEKGTFADMLDPAVPNWPVEEALSFAQLALKCVELRKRDRPDLGTVIVPELNRLRDLGSSSDSHSHGCQGNSGGYSSDGNTSANGRSSRSMLSADSQESLTKTANSDP
Length742
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.504
Instability index47.82
Isoelectric point8.08
Molecular weight81974.99
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12913
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.12|      39|      41|     207|     247|       1
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  207-  247 (63.69/53.51)	SVDNT.PKApmRDRDRQRSSPANLSFDIDSAMRAAQ.PSSSQD
  250-  290 (61.43/43.37)	SSDSSlPNK..RSHGSIDFSDQNLDFSVISGPSTGQlPQSSRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     190.46|      47|      49|     330|     377|       2
---------------------------------------------------------------------------
  292-  327 (51.31/32.02)	...EA...EMRRLKLELKQTM.DMYSTACKEALTAKQKANEL.....H
  330-  377 (69.55/50.48)	KMEEARKFEEARLAGEAALAMAEKEKAKCKAAIEAAEAAKRLaEMEAH
  380-  425 (69.59/46.00)	RQAELKAKKEADEKNRALNALAHNDVRYRKYTIEEIEEATE..NFEAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.62|      42|     116|     511|     552|       4
---------------------------------------------------------------------------
  511-  552 (72.58/43.14)	PPLSWRRRFTIAAEIATALLFLHQAKPEPLVHRDLKPANILL
  623-  664 (75.03/44.82)	PPMGIAHHVGRAIEKGTFADMLDPAVPNWPVEEALSFAQLAL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12913 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSSSDSHSHGCQGNSGGYSSDGNTSANGRSSRSMLSADSQESLTKTANSDP
2) TAQRPISNTATPPKAPCGMPPPIPSDQIEDDGSRAYYARGGSRNAGADRMSVDNTPKAPMRDRDRQRSSPANLSFDIDSAMRAAQPSSSQDSLSSDSSLPNKRSHGSIDFSDQNLD
692
157
742
272










Molecular Recognition Features






MoRF SequenceStartStop




NANANA