<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12908

Description U-box domain-containing protein 35-like
SequenceMSDVNDEVAKAYKQQLESQAKEVFLPFRCFCSRKDIKCNEVILEDTDISKALIDYVSSFPIETLVLGAPSRSGFVRRFRTAEVTTNVSKGAPDYCTIYVIGKGKISSVRSASAPPPPRPQSQPLLQPQTDNNIPDPTESPSSARAVVNPRHRAPQRPHNPHRNLHEEAEIKSPFTRARNVMKYEPPTPESDISFVSSGKPSSDTMFSSTSDNMEFGNPPRLSSCSDFDNRSMASSVDFSSQYNFSFCSEESGRTSWSSHNMDDVEAEMRRLKQELKQTMDMYSAACKEALSAKKKAMELQSWKMQEEQKKEEARVAEKAALSLAETEKAKCNAAIEAAQAAQRMAELEAQKSTNIERKANIDYADDDDMNMALNGFGHHLMYRKYTIEEIEIATDNFSPSRKIGEGGYGPVYHSNLDHTPVAIKVLRPDATQGQSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFMHNNSPVLPWQIRFRIAAEIATGLLFLHHTKPKPLVHRDLKPANILLDHNYVSKISDVGLARLVPPSVANSVTQYRMTSAAGTFCYIDPEYQQTGMLGIKSDVYSLGIMLLQIITAKPPMGLAHRVENAIEEGSFAEILDPAVTDWPLEEALSFAKLALKCAELRRRDRPDLGQVVLPHLNKLRDLAESNMPFMTFGGSAGPSPNNTQVSTSSMLQDFLNQPPQFLHSECDSISSGSD
Length718
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.476
Instability index58.73
Isoelectric point5.73
Molecular weight79924.46
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12908
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.99|      26|      30|     157|     186|       1
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  119-  148 (35.95/12.46)	PQSqPLLQPQTDNNIPDPTespSSARAVVN
  157-  182 (47.04/25.63)	PHN.PHRNLHEEAEIKSPF...TRARNVMK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.69|      25|      37|     190|     216|       2
---------------------------------------------------------------------------
  190-  216 (41.31/28.90)	SDI...SFVSSGKPSSDTMFSSTSDnmEFG
  225-  252 (42.39/23.34)	SDFdnrSMASSVDFSSQYNFSFCSE..ESG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.66|      17|      37|      46|      67|       3
---------------------------------------------------------------------------
   46-   67 (23.13/25.53)	TDISKALIDYVSSFpietlVLG
   85-  101 (32.53/20.70)	TNVSKGAPDYCTIY.....VIG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.32|      24|      30|     350|     377|       4
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  350-  377 (34.16/34.59)	QKSTnIErkaNIDYADDD...DMNMALNGFG
  383-  409 (37.16/23.58)	RKYT.IE...EIEIATDNfspSRKIGEGGYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.78|      25|      30|     267|     291|       5
---------------------------------------------------------------------------
  267-  291 (42.27/26.41)	EMRRLKQELKQTMDMYSAACKEALS
  298-  322 (40.51/25.05)	ELQSWKMQEEQKKEEARVAEKAALS
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.85|      24|     101|     590|     614|       6
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  590-  614 (37.59/28.65)	LLQIITAKPPMGLaHRVENAIEEGS
  694-  717 (45.26/30.12)	MLQDFLNQPPQFL.HSECDSISSGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12908 with Med32 domain of Kingdom Viridiplantae
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