Description | mediator of RNA polymerase II transcription subunit 17-like isoform X3 |
Sequence | MDGNLEISLDKLPVKRLDAIEENGLERYPPESSYDEKRVSLIRRIDFAWAVEEDEEKERKKKQKKNSSKDASATWQWQSMVENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNELMSGLAVSAATKLQCYWHLGKYFKQSANALEQQIAREARFYGALIRTHGSVGQHTRNTEKESMSDDEYVKETHLLLRDVHQSIFNDQVFDMLNCEAFNQSVGVNVTGMRENYLQLSIGQGTSLFISLVPSSESNNQAVDTANTQNVDSAIVALDSFDEVKFGEREHDTPTMKKKWGFPHRISCEIYLQQIVHEHAFLKAKDKPNLSGTPVSGQSGKDGPGLLGHFCLSLAHRIFSSRVLIELENVVCRVPYLHLMTHPTWHSRTSSWTIFMKVPQSILHAESQSPRSDFQNIKDVIKSQFHTKVVLSDDRINVEGEGAPNVAGLFKRSSEDICSVNKYDCDLVDLPVILLQQVASQVIRWLHEEALMVGIKTNRDFLSLTFDLEQGESVSLVAHVDPEDIQGGISWWLVMEYGFAEDWKLQMEMYDGTPEYRKFLGHLNLDVLYSTMMDLVTLCDGGGNQ |
Length | 581 |
Position | Head |
Organism | Gossypium hirsutum (Upland cotton) (Gossypium mexicanum) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium. |
Aromaticity | 0.08 |
Grand average of hydropathy | -0.379 |
Instability index | 42.55 |
Isoelectric point | 5.30 |
Molecular weight | 65737.57 |
Publications | PubMed=25893780 |
Annotated function |
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP12904 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 154.31| 52| 218| 299| 363| 1 --------------------------------------------------------------------------- 299- 363 (70.30/70.22) PHRISCEIYlQQIVHEHAFlkAKD.KPNL...SGTPvsgQSGKdgpgLLGHFCLSLahrIFSSRV.LIEL 518- 574 (84.02/47.08) PEDIQGGIS.WWLVMEYGF..AEDwKLQMemyDGTP...EYRK....FLGHLNLDV...LYSTMMdLVTL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 243.10| 79| 324| 96| 185| 2 --------------------------------------------------------------------------- 96- 185 (120.82/98.24) DLINtVEANDAVTVAGMTRPkplpnelmSGLAVSAATKLQC.YWHLG.KYFKQSANALEQQIAREARFYGalIRTHGSVGQHTRNTEK.ESMS 430- 511 (122.28/74.74) DRIN.VEGEGAPNVAGLFKR........SSEDICSVNKYDCdLVDLPvILLQQVASQVIRWLHEEALMVG..IKTNRDFLSLTFDLEQgESVS --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EISLDKLPVKRLDAIEENGLERYPP 2) YDEKRVSLIRRIDF | 6 34 | 30 47 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab