<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12879

Description U-box domain-containing protein 34-like isoform X2
SequenceMEMSVGSANTGGSPTKLTTVAIAVKSGSDSRRAVRWVVENLKADRFVLVHVMPAVTSIPTPSGDQIPITEMDENVVAMYVQEVKLKFGQVFIPFLNLFKTSKVETVVLEDDYPAVGLLRYISEFGIQTLVLGSYSSNYMKRKLKGPGVPNSVLKCAPDTCDIRVVYRQRIITKQGTSSSGIKKHIYGPINASAESTAQNSFGTASSFELNYPYLHAFSSRGSLTNASSISHCHSLGSTQSEKAEVEQLRLELQNTVAMYKEACEELVDTQNKVRLLSSECLEEASRVNAAQEREEAFRKIAAEEKVKLLQAMKDVEEAKHLLSREANRRQMAELNAHKESLEKQKFVDALFCCDRRYRKYTRDEIEVATDFFSVSNVIGQGGYGKVYKCSLHRTPVAVKVLQSDALDRKEEFLREVEVLSQLHHPHIVLLLGACPENGCLVYEYLENGSLEEHILQKSGKPPLPWFIRFRIVFEVASGLAFLHNSKPDPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDVVPDNITMYKDSILAGTLFYMDPEYQRTGTVRPKSDLYALGLTTLQLVTARHPNGLLLAVENAIKNCCLADILDKSITDWPLAETEELARIALKCSKLRCRDRPDLDTEVLPILKRLVDVADASLKLGKNNVYAPSYYFCPILQEVMDDPHIAADGFTYEHRAIKAWLGKHNVSPVTKRQLQHSVLTPNHTLRSAIHDWKSRVTLSST
Length729
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.232
Instability index43.65
Isoelectric point7.83
Molecular weight81527.59
Publications
PubMed=25893780

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12879
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.83|      35|      39|     478|     513|       1
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  478-  513 (59.04/49.87)	GLA.FLHNSKPDPI.VHRD.LKPGNIL.LDRNYvSKIGDV
  514-  552 (44.80/31.92)	GLAkLISDVVPDNItMYKDsILAGTLFyMDPEY.QRTGTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     224.51|      72|     558|      80|     156|       2
---------------------------------------------------------------------------
   80-  156 (109.26/91.05)	VQEVKLKFGQ..VFIPflnLFKTSKVETVVLEDDYPAVGLLRYiSEFGIQTLvLGSYS.SNYMKRKLKGPGV.PNSVLKCA
  641-  716 (115.24/78.43)	VADASLKLGKnnVYAP...SYYFCPILQEVMDDPHIAADGFTY.EHRAIKAW.LGKHNvSPVTKRQLQHSVLtPNHTLRSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.01|      27|      30|     250|     276|       3
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  250-  276 (43.69/35.36)	LELQNTVAMYKEACEEL..VDTQNKVRLL
  281-  309 (33.32/25.02)	LEEASRVNAAQEREEAFrkIAAEEKVKLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12879 with Med32 domain of Kingdom Viridiplantae
Unable to open file!