Description | mediator of RNA polymerase II transcription subunit 6-like |
Sequence | MATPPVAAGGNFEASPPPPMQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGMEYMLSEVMEPHLFVIRKQKRDSAEKVTPMLAYYILDGSIYQAPQLCNVFAARVGRALYYISKAFTTAASKLEKIGYVDTENESETVEPKGGKEAINIKEVKRVDHILASLQRKLPPAPLPPPFPDGFVPPSTAEAEKDPENQQTAEPQPSAVDPIIDQGPAKRMKF |
Length | 252 |
Position | Head |
Organism | Gossypium hirsutum (Upland cotton) (Gossypium mexicanum) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium. |
Aromaticity | 0.09 |
Grand average of hydropathy | -0.414 |
Instability index | 55.64 |
Isoelectric point | 5.35 |
Molecular weight | 28193.00 |
Publications | PubMed=25893780 |
Annotated function |
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GO - Cellular Component | core mediator complex GO:0070847 IBA:GO_Central mediator complex GO:0016592 IBA:GO_Central |
GO - Biological Function | transcription coactivator activity GO:0003713 IBA:GO_Central |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central |
Binary Interactions |
Repeats | >MDP12867 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 52.10| 11| 187| 16| 26| 1 --------------------------------------------------------------------------- 16- 26 (26.57/10.80) PPPPMQPPGTD 201- 211 (25.53/10.11) PPAPLPPPFPD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 37.13| 11| 24| 109| 120| 2 --------------------------------------------------------------------------- 109- 120 (16.93/15.49) AEKVTPMLaYYI 136- 146 (20.20/13.00) AARVGRAL.YYI --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) IIDQGPAKRMKF 2) LASLQ | 241 193 | 252 197 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab