<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12864

Description mediator of RNA polymerase II transcription subunit 33B-like
SequenceMEVGPVWESVLEQTKSAQDKNSDPLVWAVQLSSRLNSAGVSLPSIDLAHLLVSHICWDNHLPITWKFLEKALTANFVPPMLVLALLSTRVIPKRKFHPTAYRLYMELLRRHAFPLKCQINGLNYQKIMKSIDDVLHLSLIFGVQVSEPGLLLVEFVFSIVWQLLDASLDDEGLLELTPEKRSIWPTVTQDMEIDTADNFNETRSAHHDVLYKGNTMIAIEIIGEFLQNKVTSRILFLARRNMPSHWEAFIQQLRVLAAKSVELRNSKHITPENLLQLTSDTHNVLSRECKRISQQALHAVMGDGSLTSPSGQWHGTSPSALWLPIDMFLEDAMAGPQVAASGAIDRLAGLVKALQAVNGTTWHDTFLGLWIAALRLVQRERDIIEGPVPRLDTCLCMLLSITTLVVANIVEEEESELIDETDCSPSNPTKEKQTMGRCRKGLISSLQMLGDYEALLTPPQAVCSVANQAAAKAIMFHSGLTVGNGYYECMSINDMPMNCSGNLRHLIIEACISRNLLDTSAYLWPGYVNVRANIPHSVPSQVPGWSSLMKGSPLTPTLINALVATPASSLPEIEKIYEIATKGSDDEKISAASILCGASLVRGWNIQVICSRSLHTVCITHWLILEYSYVPCELKKGPWSYFLNEFSEKTLLSYIANELHMVFLRDGNKVPLLAGALMPLCEVFGSTAPNVSWTLPTGEELTSHAVFSNAFTILLMLWKFDHPPVEHVMRDATPVGSERSPDYLLLVRNSKLSAFGKSAKDRLKIRRMSKILNFCMEPIFMDSFPKLKRWYRQHQKCIASTLSGLVQGTTVHQIVDALLNMMFRKIGRAAQSSTSTTSGSSCSSASGAEDILARLKVPAWDILEGAPYVLDAALTACAHGRIAPRELATGLKDLADFLPATLGTIISYFSAEVTRGIWKPVFMNGTDWPSPLANLSVVLQQIKKFIAATGVDVPSLETGGSSPAMLPLPLAALVSLTITYKLDKSSERSLVLLGPAMSSLGGSCPWPCMPIISALWAQKVKRWNDFLVFSSARTVFHHNSDAVVQLLRSCFTATLGLSPSIMCSNGGVGALLGHGFGSHFSGGMAPVSPGIMYLRSHRTIRDIMFMTEEIVSLLMFSVKEIASRLSQEKMEKLKKTTFGLRYGQVSLGTAMTRVKLAASLGASLVWLSGGLSLVQSLIKETLPSWFISAHTPELDRGEPGGVVSMLRGYALAYFAVLCGTFAWGVDSVSPESRRRPKVLDSHLEFVASALDGKISLGCDYATWRAYVTGFVSLMVGCTHKWVLDVNVDVLKRLSNGLRQWNEEELAIALLGLGGATAAGTAAELIVEIGA
Length1330
PositionTail
OrganismGossypium hirsutum (Upland cotton) (Gossypium mexicanum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.08
Grand average of hydropathy0.143
Instability index45.78
Isoelectric point7.05
Molecular weight145842.63
Publications
PubMed=25893780

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12864
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.70|      17|     151|     894|     936|       1
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  628-  644 (35.26/ 7.06)	SYVPCELKKGPWS.YFLN
  907-  924 (28.44/27.09)	SYFSAEVTRGIWKpVFMN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     210.77|      55|     159|     993|    1048|       2
---------------------------------------------------------------------------
  954-  991 (38.75/20.09)	..PSL......ET.GGSSP.AM..LPLpLAALVSLTITYKLD...KSSERSLV............
  993- 1048 (96.56/68.17)	LGPAM......SSLGGSCPWPC..MPI.ISALWAQKVKRWNDfLVFSSARTVFHHNSDAVVQLLR
 1147- 1207 (75.46/47.42)	LGTAMtrvklaASLGASLVWLSggLSL.VQSLIKETLPSW...FISAHTPELDRGEPGGVVSMLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.24|      14|      90|      92|     107|       4
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   92-  105 (27.06/20.65)	P.KRKFHPTAYRLYM
  114-  128 (22.18/ 8.74)	PlKCQINGLNYQKIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.30|      45|     477|     375|     425|       6
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  375-  425 (71.20/58.61)	RLVQRERDIIEGPVPRLDTCLcmllsiTTLVVANIVEEE.ESELIDETDCSP
  854-  899 (75.10/48.04)	RLKVPAWDILEGAPYVLDAAL......TACAHGRIAPRElATGLKDLADFLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.99|      49|     657|      18|      67|       7
---------------------------------------------------------------------------
   18-   67 (83.74/46.08)	QDKNSDPLVwAVQLSSRLNSAGVSLPSID....LAHLLVSHICWDNHLPI...TWKF
  665-  720 (76.26/37.16)	RDGNKVPLL.AGALMPLCEVFGSTAPNVSwtlpTGEELTSHAVFSNAFTIllmLWKF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12864 with Med33 domain of Kingdom Viridiplantae
Unable to open file!