<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12852

Description U-box domain-containing protein 34
SequenceMSQKSFSGEKDKATVVAIDKDKGSQYALKWAIDNLIGRGKNVTLLHVKIRPSNSLPNADVSDGTPRVYKSDPDTQAKELFLPFRCFCNRKNIQVNEVVLEGIDIANSISDYVTANVIENLVMGATSRNGFVSRFKTIDVPSSVFKVIPGFCTVYVIAKGKVQSIKNATSPVPSSPPVTLQNQTTASLGAKLGFVDTRYGQSNDTRGSMTEIRSPYATRSSNDDTDFIKSPFNRGKGINRSYGDLSVGESDLSFVSSGRPSSDRTFPISMDSHDLGLPPRLSNSSDTDIKYSAPRLSNSSETDSRLSFGSSYSATRLSEVNAFSSNSFESGNGSWSSTNNLEEIEAEMRRLKQELKQTMDMYSSACKEALSAKHKALELHRWKVEEEQKLEDARLAEEAALAIAEKEKAKCRAALEAAEEAQRIAEREAQRRITAERKAIIEAEEKKKVLDALAQSDCRYRKYTIEEIEAASDNFAASRKIGEGGYGPVYKCYLDHTQVAIKVLRPDAAQGRSQFQQEIEVLSCIRHPNMVLLLGACPEFGCLVYEYMANGSLDDRLFRRGNTPVLPWQLRFRIAAEVGTSLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGTKSDIYSFGIMLLQIITARPPMGLTHHVERAIEKGTIADMLDPAVPDWPVEEALTFAKLALKCAELRRKDRPDLGTVILPELNRLRILAEEAMQPMHFGRSPTSESRSIPQVISGFDSNKSRSSNPFSSSTKSRGE
Length791
PositionTail
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.438
Instability index47.35
Isoelectric point8.09
Molecular weight87577.08
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12852
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.34|      32|      41|     397|     437|       1
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  365-  392 (28.08/14.82)	.............CKEALSAkhkALELHR...WKVEE.EQK...LEDA
  397-  437 (44.28/53.77)	EaalaiaekeKAKCRAALEA...AEEAQR...IAERE.AQRRITAERK
  444-  479 (39.99/29.42)	E.........KKKVLDALAQ...SDCRYRkytIEEIEaASDNFAASRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.12|      36|      41|     238|     274|       2
---------------------------------------------------------------------------
  186-  226 (30.57/12.89)	.......SLG...........AKLGFVDT...RYGQSNDTRG.SMteirspyatrssnDDTDF
  238-  274 (61.52/36.43)	NRSYGDLSVG..........ESDLSFVSS...GRPSSDRTFPiSM.............DSHDL
  282-  328 (37.04/17.01)	NSSDTDIKYSaprlsnssetDSRLSFGSSysaTRLSEVNAF..SS.............NSFE.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.56|      39|      42|      86|     126|       3
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   86-  126 (60.58/54.36)	FCNR.KNIQVNEVVLEGidIANSISDYVTANVIENLVMGATS
  130-  169 (61.97/48.01)	FVSRfKTIDVPSSVFKV..IPGFCTVYVIAKGKVQSIKNATS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.70|      20|     167|     557|     576|       6
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  557-  576 (39.07/28.14)	FRRGNTP.....VLPWQLRFRIAAE
  721-  745 (29.62/19.45)	LRRKDRPdlgtvILPELNRLRILAE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12852 with Med32 domain of Kingdom Viridiplantae
Unable to open file!