<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12850

Description ATP-dependent DNA helicase
SequenceMGRTEELLEELLNVEVELQDVQEQIKFLLDRQEKLHERRFELKALVESCESSSGPGADNAAVSVDDWSRPFEWDSQADDIRFNVFGISKYRANQREIINAIMNGRDVLVIMAAGGGKSLCYQLPAVLRDGVALVVSPLLSLIQDQVMGLAALGIPAFMLTSTTTKENEKFIYKALEKGGDELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATKKVQDDLMEMLHIPRCVKFVSSVNRPNLYYMVREKSSTAKTVVDEIAEYIRTSYPNNESGIVYCFSRKECEQVALELREREISADHYHADMDVNARERVHLRWSNGKLQVIVGTVAFGMGINKPDVRFVVHHSLSKSMETYYQESGRAGRDGLPSECVLFFRPADAPRQSSMVFYENSGLKNLYDIVRYCQSKRECRRSAFFRHFAEPLQECNGMCDNCAFSNEVEELDVSSHAKLIVSMLKDIQENDQRVTMLQLVEKLKVKQKNLGPDLKKDELEHLVIKLILDHVLKEEFQHTAYATNAYVTVGPLAKLVLQGNKTIKFEMSTRRSRTSSSMKSSKRERSSGLDDKLDELRKELASIHGGIFPHSVLSTQQISTLSSQKPKSIEELEKIIGKLKTEKYGSRILEEIASYESDPQQDAEGIKETKAKVVKKLKTKRTVVVLESSEDEA
Length706
PositionUnknown
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.410
Instability index44.03
Isoelectric point6.83
Molecular weight80010.70
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12850
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.25|      19|      96|     273|     301|       1
---------------------------------------------------------------------------
  273-  291 (32.98/13.67)	VKFVSSVNRP..............NLYYMVREK
  371-  389 (31.98/12.85)	VAFGMGINKP..............DVRFVVHHS
  414-  444 (15.29/12.64)	VLFFRPADAPrqssmvfyensglkNLYDIVR..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.03|      30|      43|     580|     612|       6
---------------------------------------------------------------------------
  580-  612 (43.67/40.20)	MSTRRSRTSSSMKSSKRERssgLDDKLDELRKE
  626-  655 (47.36/34.00)	LSTQQISTLSSQKPKSIEE...LEKIIGKLKTE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12850 with Med34 domain of Kingdom Viridiplantae
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