<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12844

Description U-box domain-containing protein 35
SequenceMEEKDEAVTKVEGLSALPPLNSSTIAVAINGKKKSKHVVRWALDKFVPEGKVCFKLLHVRPRITGVPTPMGNFIPISQVRDDVVAAFRKDVELQTSGNLLPYKMLCTNRKVQVEVLQLESDDIVKAIAQEVTKHNIIKLVIGASSRSIFSRGQSLSSRISDGTPSFCTIYAVSKGKLSSIRPDSKINGTSLAGDSYTSCSITSSTGHTSSSLTERSEPDSSTSYSHFHSPSLPMQRFRALSLINQNFPHRRASSNVPVHHKKYSLDFDDGEDDASSCPQGTFLTDGDDLASSFRSLVTNNYTTADDQASISGAPTNSSSRFEADINFELEKLRTELRNTRGMYAVAQTEVIEASRKINELQKRRLEEDIKLREICLKEEEVKELARKENEKYEAAKKEADYVKDCAEREAAQRKEAELLALREAKEKEKLEHALMGQAHQYQEFSWEEIVSSTSSFSENLKIGTGAYGTVYKCSLHHTTVAVKVLHSEGSHLTKQYQRELEILSKISHPHLLILLGVCPDRGCLVYEFMENGSLEERLLRKHDTPPIPWFDRYRIAWEVASALAFLHSSKPDPIIHRDLKPANILLDRNFVSKIGDVGLSTMINSDAMLSTIYKDTGPVGTLCYIDPEYQRTGLISPTSDIYAFGMVLLQLLTAKAAMGLPHIVETATDNDNLTKVLDPEAGKWPLEETKELAILALKCTELCRRDRPDLKDEILPALEKLKEVADKARDSASPAQPPPPNYYLCPLLKSIMEEPCVAADGYTYDRKAIETWIKENNVSPMTNLPLAHKNLLPNYALLSAILDWKSR
Length807
PositionTail
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.403
Instability index39.11
Isoelectric point6.24
Molecular weight90084.45
Publications
PubMed=29089032

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12844
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.57|      19|      35|     377|     395|       1
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  377-  395 (31.39/19.91)	KEEEVKELAR............KENEKYEAA
  403-  433 (23.18/12.89)	KDCAEREAAQrkeaellalreaKEKEKLEHA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.05|      14|      35|     152|     169|       2
---------------------------------------------------------------------------
  152-  169 (17.55/19.83)	GQSLSsriSDGTPSfCTI
  188-  201 (26.51/13.67)	GTSLA...GDSYTS.CSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.27|      21|     320|     228|     248|       4
---------------------------------------------------------------------------
  228-  248 (39.00/23.63)	H.SPSLP.MQRFR.......ALSLINQNFP
  542-  571 (23.27/11.31)	HdTPPIPwFDRYRiawevasALAFLHSSKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.98|      25|      35|     252|     278|       5
---------------------------------------------------------------------------
  252-  278 (36.72/31.36)	ASSNVPVHHKKYSLDfDDgEDDASSCP
  290-  314 (42.26/25.41)	ASSFRSLVTNNYTTA.DD.QASISGAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.50|      47|     186|     483|     536|       9
---------------------------------------------------------------------------
  483-  536 (75.26/62.24)	KVLHSEGSHLTKQYQRELEILSkishphlLILLGVC.PDRGCLVYEFMEN.GSLEE
  675-  723 (72.24/45.03)	KVLDPEAGKWPLEETKELAILA.......LKCTELCrRDRPDLKDEILPAlEKLKE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12844 with Med32 domain of Kingdom Viridiplantae
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