<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12840

Description Uncharacterized protein
SequenceMELLTPSPNFPSGFSSMATFKRGFYRTSQIFITPQSSEIVVEEQQEEEGSRVYVAVGKSVDKGVVASVQWACKTFGNSEICILHVLQPSPYIPTLLGRLPATQANAEVVSTFRNAEREEARKLLSRFLSVCCKSKVKASVAIVESDQVLKGILDFVNKHNIRKLIIGAIPDCVKVKKSSWKASYAATNFPSFCEIFFVYKGKLVWSRQHPEYSSFIAPISPNTREVAVDVCGLRSQSLKSCKNEAIRFPECARSSSSRDLLPSGIKSLISSETDLRFKSFSSTSRSNLISVPALSISTSSTPDSSCASSAEQLVSLDAEMESLYKQLAEVSTEFESSRTEAFAEIHKRKKLEAEAAESLRKVKAFESAHAHEVELRKEAEDALGATLLEKEKLLKERKEITYELRKAMRNIALLDSRTQEANRQREEIAGELSLIHSSLVTLRKEKQKLQQQTGEAVHWINSWKNRGNDGGLSPNYLTECAESLELVEFSLSDLETATCNFSESFRIGQGGYADVFKGEFSDKTVAIKQLHPHNMQRQSQFFEQVEILAKLHHPHLVTLLGMCPEVWCLVYEYFSGLSLQDRLFGKNNISPMNWKMRARILAEIASALLYLHSYPEKIVHGDLRPENVLLDSTGSCKVCDVWISGLIPKQALRCPSFDRLSEPKGLFSYTDPEFHVTGALTPKSDIYALGLIILQMLTGRTLVGLVSEVRRAVSCAQLESLLDPSAGEWSTFVSRRLAELALQCCEVNSRDRPELTPALVMELENLNELEEQSVPSFFLCPIRQDILHDPQVAADGFTYEGEAIQGWLESGHDTSPMTNLKLRHLELTPNHALRLAIKDWVCNL
Length844
PositionTail
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.08
Grand average of hydropathy-0.224
Instability index50.44
Isoelectric point6.19
Molecular weight94393.72
Publications
PubMed=29089032

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12840
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.13|      29|      56|     249|     287|       1
---------------------------------------------------------------------------
  249-  279 (45.99/41.35)	PE..CArsSSSRDL..LPSGIKSLIS..SETDLRFKS
  302-  336 (36.15/13.29)	PDssCA..SSAEQLvsLDAEMESLYKqlAEVSTEFES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.17|      55|      58|     609|     663|       2
---------------------------------------------------------------------------
  609-  663 (99.21/64.17)	LYLHSYPEKIVHGDLRPENVL..LDSTGSCKVCDVWISGLIP..KQALRCPSFDRLSEP
  666-  724 (81.96/51.76)	LFSYTDPEFHVTGALTPKSDIyaLGLIILQMLTGRTLVGLVSevRRAVSCAQLESLLDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.70|      16|      57|     472|     494|       3
---------------------------------------------------------------------------
  427-  442 (25.82/12.69)	EIAGELSLIHSSLVTL
  479-  494 (26.88/ 9.54)	ECAESLELVEFSLSDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12840 with Med32 domain of Kingdom Viridiplantae
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