<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12835

Description Mediator of RNA polymerase II transcription subunit 33B
SequenceMEVPMQCSLWESVLELTKVSQEKGGDPLVWAIQVSSCLSSSGVSLPSLELANFLVSHICWENNLPIAWKFLEKALVLKIVSPIIVFPLLSSRVIQNRHLRPTAYRLYMELLRRHIFTLKIHVNMQSYKKILNFLDSVLHLTEVFGMHADEPGVLVVEIIFSIVWQLLDASLDDEGLLQLTPEKKSRWPTKTEDMEIDGCIADMERNEHKERLKNLNTLLAIELIGQFLQNKATARILYLARQNMPVHWGAFVQRIQLLAGNSSALQSSSIISPKALLQLASDAHNLIKANSLQEYVRSTSRSLATCAGFCFGSSRSSLWLPLDLFLEDAMDGSQVNATSAIEIITDLVKSLQAINATTWHETFLGLWMAALRLVQRERDPIEVPVPRLDTRLCMLFSLITLVIADLIEEEESEACDEIESSIDRRMKKQVEGTRRGDVVSCLQYLGDYQSLLTPPQAVTTAANQAAAKAMMFRSGINTSTSYFECINMKDTPTNCSGNLHHLIVEACIARHLLDTSAYFWPGYVNGHMNQLPASLPTQVPGWSSFMRGAPLTPAMINTLVSAPASSLAELEKIFEMAVKGANDEKIAAATILCGASLILGWNIQEHTVNFITRLLSPPVPTDYSGKESHLIGYAPMLNVLLVGIAPVDCVQIFSLHGMVPQLAASSMTICEVFGSCAPNISWTLTTGEDISVHAVFSNAFALLLKLWRFNHPPIEYRVGDVPPVGCQLTPEYLLLVRNSHLVSSGNMLKDPNRRRLATVASSSSPNPIFVDSFPKLRVWYRQHLACIASTLSGLVNGTLVCQTVDVLLNMMFKKINSGSQSLISVTSGSSSSSGTGSEDTSPRPKLPAWDILEAIPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLATIVSYFSAEVTRGVWKPVFMNGTDWPSPAANLSNVEEQIKKILAATGVDVPSLAAGGSSPAILPLPLAAFVSLTITYKLDKASQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLSNNHAVIQLLKSCFNATLGLNSSSISSNGGIGALLGHGFGSHFYGGISPVAPGILYLRVYRSIRDIMFLREEIVLLLMQSISEIAHSELPRQRLNKLKIPKNGKKFGNVSLAATMTRVKLAALLGASLLWLSGGSGLVQSLIKETLPSWFLSVHNTNQEGDIGLLVPMLKGYALAYFAVLCGAFASGVDSLSMASKRRPKIIGRHVEFIASVLDGKISLGCDPATWHAYVSGFVSLMVGCTPTWVFEVDAELLKRLSKGLRRWHEEDLALALLSIGGIGTMGSAAELIMEASS
Length1319
PositionTail
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy0.214
Instability index48.31
Isoelectric point6.88
Molecular weight143980.52
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12835
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.49|      43|     132|     492|     537|       1
---------------------------------------------------------------------------
  492-  537 (78.04/58.79)	PTNCSGNLHHLIVEACIARHLL......DTSAYFWpgyVNGHMNQLPASLPT
  620-  668 (73.45/46.15)	PTDYSGKESHLIGYAPMLNVLLvgiapvDCVQIFS...LHGMVPQLAASSMT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.82|      39|     132|     281|     321|       3
---------------------------------------------------------------------------
  281-  320 (61.03/46.38)	SDAhNLIKANSLQEYVRSTSRSLATCAGFCFGSSRSSLWL
  330-  368 (65.79/39.35)	MDG.SQVNATSAIEIITDLVKSLQAINATTWHETFLGLWM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.72|      23|     132|      77|     108|       4
---------------------------------------------------------------------------
   82-  106 (38.76/37.62)	PIIV..FPLLssRVIQNRHLRPTAYRL
  767-  791 (40.97/15.47)	PIFVdsFPKL..RVWYRQHLACIASTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.92|      25|     354|     547|     572|       7
---------------------------------------------------------------------------
  547-  572 (36.99/24.90)	RGApLTPAMIN.TLVSAPASSLAELEK
  904-  929 (43.93/24.83)	RGV.WKPVFMNgTDWPSPAANLSNVEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.69|      20|     352|      14|      61|       8
---------------------------------------------------------------------------
   18-   39 (32.60/31.12)	KVSQekGGDPLVWAIQVSSCLS
 1242- 1261 (38.08/ 6.22)	KISL..GCDPATWHAYVSGFVS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12835 with Med33 domain of Kingdom Viridiplantae
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