<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12834

Description Mediator of RNA polymerase II transcription subunit 33B
SequenceMVSVQQQQSPLLNGVIELTKSAQLKNADPLSWAIQLSSILSTGGLSLPSTDVAELLVSYICWENNVGIAWKFLEKAAALRIVPPLFLLSLLSNRVIPKRRSYPVAYRLYMELLKIYVFSLPSLINGPNYQKIMEAIDDTLHLSQIFGLQGSESGLIVVEFVFTIVWKLLDASLGDEGLLDLTAEKRSRWPITSSQDVGLNNHYAFAGGRTEKHEVLCKTNTVMAIEIIGEFFQDKVTSAILYLARRNMPTHWESFTQNLRLLVANSSALRNSKNISPEALVQLTSDKRVVLSRKYKTISHKRFHAVMASGSLVSSADQYHGASPAVLWLPIDLFLEDTMDGSQVAATSAVETLAGLVKALHEVNSSSWQDTFLGLWFAALRLVNRERDSSEGPVPRLDTCLCVLLSITPLAIVNLLEEEEMSCSSANQRKESSTKRHQDLIHSLQQLGDYESLLTPPLPAAPLANLAAAKAMMLHSGLSVGSGYFEGMNLNDMPVNCVGNLRHLIVEACIARNILDTSAYLWPGYVKGRCNQVPRSVSTQMPGWSSLMKGSTLTPPLVSSLVSTPASSLAEIKKIYEIAVNGSDDEKISAATVLCGASLARGWNIQEHTVLFITRLLSPPVPANYSGTESHLIGYARFLNVLLVGVSSVDCVQIFSLHGLVPQLAGALMPICEVFGSCAPNVKWIVMSEEISSHAVFSNAFTLLLKLWRFDQPPLEHLMDAPMGAHPTPEYLLLVRNSQLTSSDDLQKDQSKIKRLTRLSSPLSGEPIFLDSFPKLTLWYRQHQACIASPLSELVPGTPVHQIVEALLNFMFKKINRTGQSLTTTTSGSSSSSGPGNEDVSLHLKLPAWDILEAVPFVLDAALTACAHGSLSPRELVTGLKDLADFLPGSLATIVSYFSAEVSRGIWKLASMNGTDWPSPAANLATVEQQIKKILAATGVNVPSLTIGGNSPATLLLPLAALVSLTITYKLDKSTDRFLNLIGPALSNLATGCPWPCMPVMVALWAQKVKRWSDFLVFSASRTVFHHNRDAVVQLLRMCFAATLGLTTSSIASKGGVGALLGHGFGSHLSGGISPVAPGMLYLRVHRAVPNVMFMTEEVVSLLMHSVRDIASSGLSAENLEKLKKSKCGMTYGQVSLAAVLSRVKLAASLGASLVWITGGVGLVQSLIKETLPSWFLSTHGMEPSGGMSGGIVARLGGYALAYIAVLSGTFAWGVDSSSSASKRRSNTLEAHLEFLAGALHGKISLGCNRTTWTTYVSGFVKLIVECAPNWLLEVDLEVLKRLSMGLKQWDEELALAVLSSSGIGAMGATAEMIIEGGMTFMS
Length1323
PositionTail
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy0.208
Instability index44.95
Isoelectric point7.17
Molecular weight143089.02
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12834
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     366.03|      76|     103|     880|     955|       1
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  880-  955 (120.19/68.77)	LKDLADFLP.G..SLATIVSYFSAEVSRGIWKLA.SMNGTD..WPSPAANLATVEQQIKK.....ILAAT.GVNVPSLTIGGNSPATL
  986- 1061 (102.23/57.36)	LSNLATGCPwP..CMPVMVALWAQKVKR..WSDF.LVFSAS..RTVFHHNRDAVVQLLRM.....CFAATlGLTTSSIASKGGVGALL
 1065- 1123 (61.93/31.74)	.....................FGSHLSGGISPVApGMLYLR..VHRAVPNVMFMTEEVVS.....LLMHS.VRDIASSGLSAENLEKL
 1124- 1196 (81.68/44.29)	KKSKCGMTY.GqvSLAAVLS.......RV..KLA.ASLGASlvWITGGVGL..VQSLIKEtlpswFLSTH.GME.PSGGMSGGIVARL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     273.04|      87|     337|     298|     403|       2
---------------------------------------------------------------------------
  298-  403 (135.23/104.25)	ISHKRFHAVMASGslVSSAD.....QYHGASP..AVLWLPI.DLFledtmdGSqvaatsavetLAGLVKAL........HEVNSSSWqDTFLGLWFAALRLVNRERDSSEGPVPRLDTCLCV
  633-  735 (137.81/73.34)	IGYARFLNVLLVG..VSSVDcvqifSLHGLVPqlAGALMPIcEVF......GS..........CAPNVKWIvmseeissHAVFSNAF.TLLLKLWRFDQPPLEHLMDAPMGAHPTPEYLLLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.68|      19|     100|     443|     470|       3
---------------------------------------------------------------------------
  443-  461 (35.86/14.47)	SLQQLGDYES............................LLTPPLPAA
  546-  560 (26.17/ 6.73)	SLMK.G...S............................TLTPPLVSS
  578-  623 (10.66/ 7.78)	IAVNGSDDEKisaatvlcgaslargwniqehtvlfitrLLSPPVPA.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.92|      16|     101|     173|     188|       7
---------------------------------------------------------------------------
  173-  188 (27.50/19.11)	LGDEGLLDLTAEKR...SR
  275-  293 (22.41/14.05)	ISPEALVQLTSDKRvvlSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.85|      46|     736|     499|     544|       8
---------------------------------------------------------------------------
  499-  544 (85.40/56.95)	GNLRHLIVEACIA...RNILDTSAYLWPGYVKGRCNQVP....RSVSTQMPGW
  797-  849 (67.45/43.24)	GTPVHQIVEALLNfmfKKINRTGQSLTTTTSGSSSSSGPgnedVSLHLKLPAW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12834 with Med33 domain of Kingdom Viridiplantae
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