<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12765

Description U-box domain-containing protein 35-like
SequenceMEILETEEQLALPPPSSLTVAVAVSGSKKSRLVLRWALDKFISEGATLFKLLHVRSVITKVPTPMGNSIPISQVRDDVAAAYRKEVEWNANNMLLPFKKMCSQRKVQVDVVMVEADDVAKAISGEVANLTIKKLVIGASSHGMFTRKSKAHILSTRISECTPSFCTVYVVSKGKFSSVRPSTSETNVSMKPESSETSSSTYSCSSYASSFKSETGSAASYSNFNSPSLCVQRFQALSTINQTFFDAKPDPTDSIHSRGTSIDIKDREDALSSYSRNTDIQYGRSRSSGTDLQSWNSNGASTSDVQTDSSLPQSQVDINFELERLRIELRHARGMYAMAQNETIDTSQKLKALSNRRMEEANKLKEVTSKEEEAMELAKQEKEKHEAAKKQTEFLRECAERESLQRKELEAKANREAREKQNLQKVLVGPDEQYKKFTWEDILSATSSFSENLKIGMGAYGTVYKCNLHHTTAAVKVLHSKENHRTKQFQRELEILSTIHHPHLLLLLGACPNHGCLVYEYMENGSLEERLFCKDNTPPIPWFERYRIAWEIASALAFLHSSKPKPIVHRDLKPANILLDNNYVSKIGDVGLCTLIPSANSSISTICKSTGPVGTLCYIDPEYQRTGLVSPKSDVYAFGMVILQLLTAKPPIALTHIVETALGNGHLIDILDPEAGKWPIEETQQLAILGLSCTELRRSDRPDLKTQVLPVLETLKRTADRARDLRPGVQPSPPNHFICPILKDVMDDPYVAADGYTYDRKAIEIWLAKNDKSPMTNLPLPNKNLIPNYTLLSAIIEWKSTKQ
Length802
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.06
Grand average of hydropathy-0.409
Instability index44.87
Isoelectric point8.18
Molecular weight89522.00
Publications
PubMed=23663246

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12765
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.88|      25|      32|     365|     390|       1
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  365-  390 (34.79/26.30)	EVTSKEEEAMElAKQEKEKHEAAKKQ
  399-  423 (39.10/24.99)	ERESLQRKELE.AKANREAREKQNLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.85|      19|      37|      76|     100|       2
---------------------------------------------------------------------------
   76-  100 (25.06/35.66)	DDVAAAYRKEVewnANnmlLPFKKM
  116-  134 (32.80/21.85)	DDVAKAISGEV...AN...LTIKKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.43|      19|      35|     165|     186|       3
---------------------------------------------------------------------------
  165-  186 (29.32/24.18)	CTVYVVSkgkFSSVRPS.TSETN
  203-  222 (30.11/16.61)	CSSYASS...FKSETGSaASYSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.14|      15|     174|     267|     282|       4
---------------------------------------------------------------------------
  252-  266 (25.40/18.38)	DSIHSRGTSIDIKDR
  268-  282 (25.74/12.95)	DALSSYSRNTDIQYG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12765 with Med32 domain of Kingdom Viridiplantae
Unable to open file!