<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12750

Description U-box domain-containing protein 35-like
SequenceMNKSSGQRYLDNEDTGLVAVAIDTDKGSQHALRWTADHLASKAQPFILLHVRKKPLTIPTPSGRQVPISEVNEEVAYAFLEQADLQTKEILLPYQCYCNRRGLQYKEVIIDDTDVPRAIVNYVLQENIDKLVLGASSRNAIMRTFKGADVPTSVSKAAPEFCSVYVISKGRISSVRPATNPNRHPGKGQSNNVLESSAKFQSTKSEPSVPPQVDIAPHCLLARSKKLGHGHEGGLSMRGYDCKMAEKINLAIQGGGQLDSPYQNSASCPSSIDQQVNYYQRDNADFGSQRPRLPNLYRDYPDELKKSFESNRSDLTRSFESNRSELTMSCESSRNSFESSRNSTDSNRSGGQMHIIESHRIGGYLRSFESNTSSLPNWSGASSSYEHSPSAFQEDLESLEDGDAELRRLKLELQQTMDVYNKACKDALSAHQMVNDLNSRRAEEAAIQMAENERERYRTYPEASQIAQVAEIETNKRINAENKLLQEMENKKVFDSLSVDVRYRRYTAQEIQKATDCFSEDLKIGEGGYGPVFKGTLDHTLVAIKILQSNASQGMRQFQQEVEVLSCIRHPNMVLLMGACPEYGSLVYEFMANGSLEDRLFCRDNTPPLSWQLRFKIAAEVATGLLFLHQTKPEPLVHRDLKPANILLDSNFTSKIADVGLARLLPPSVAKDVTQYHMTAAAGTFCYIDPEYQKSGMLCIKSDIYALGIIFLQLITARPPMGLAHNMEEAMEVGELEEMLDPKVPDWPMEETIQFAKLALKCCELRRKDRPDLGTVVLPVLNRLRDLAYQSLSNLMVSALQHRGLP
Length806
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.07
Grand average of hydropathy-0.490
Instability index51.04
Isoelectric point6.05
Molecular weight90271.14
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12750
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.41|      31|      47|     309|     340|       1
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  309-  340 (52.23/36.36)	ESNRS.............DLTRSFESNRSELTMSCESSrNSFESS
  345-  388 (50.19/30.15)	DSNRSggqmhiieshrigGYLRSFESNTSSLPNWSGAS.SSYEHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      57.36|      15|      15|     441|     455|       2
---------------------------------------------------------------------------
  441-  455 (24.62/15.62)	RAEEAAIQMAE.NERE
  458-  473 (17.51/ 9.05)	RTYPEASQIAQvAEIE
  479-  492 (15.23/ 6.95)	NAENKLLQEME.NKK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.36|      11|      15|     274|     285|       4
---------------------------------------------------------------------------
  274-  285 (16.93/12.92)	QQVNYYqRDNAD
  292-  302 (22.43/12.31)	RLPNLY.RDYPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.03|      15|      15|      77|      91|       7
---------------------------------------------------------------------------
   77-   91 (24.90/15.75)	YA.FLEQADLQTKEIL
   94-  109 (24.13/15.04)	YQcYCNRRGLQYKEVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.97|      14|      20|     219|     234|       9
---------------------------------------------------------------------------
  219-  234 (21.67/21.31)	CLLArsKKLGHGHEGG
  242-  255 (25.30/16.82)	CKMA..EKINLAIQGG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12750 with Med32 domain of Kingdom Viridiplantae
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