<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12750

Description U-box domain-containing protein 35-like
SequenceMNKSSGQRYLDNEDTGLVAVAIDTDKGSQHALRWTADHLASKAQPFILLHVRKKPLTIPTPSGRQVPISEVNEEVAYAFLEQADLQTKEILLPYQCYCNRRGLQYKEVIIDDTDVPRAIVNYVLQENIDKLVLGASSRNAIMRTFKGADVPTSVSKAAPEFCSVYVISKGRISSVRPATNPNRHPGKGQSNNVLESSAKFQSTKSEPSVPPQVDIAPHCLLARSKKLGHGHEGGLSMRGYDCKMAEKINLAIQGGGQLDSPYQNSASCPSSIDQQVNYYQRDNADFGSQRPRLPNLYRDYPDELKKSFESNRSDLTRSFESNRSELTMSCESSRNSFESSRNSTDSNRSGGQMHIIESHRIGGYLRSFESNTSSLPNWSGASSSYEHSPSAFQEDLESLEDGDAELRRLKLELQQTMDVYNKACKDALSAHQMVNDLNSRRAEEAAIQMAENERERYRTYPEASQIAQVAEIETNKRINAENKLLQEMENKKVFDSLSVDVRYRRYTAQEIQKATDCFSEDLKIGEGGYGPVFKGTLDHTLVAIKILQSNASQGMRQFQQEVEVLSCIRHPNMVLLMGACPEYGSLVYEFMANGSLEDRLFCRDNTPPLSWQLRFKIAAEVATGLLFLHQTKPEPLVHRDLKPANILLDSNFTSKIADVGLARLLPPSVAKDVTQYHMTAAAGTFCYIDPEYQKSGMLCIKSDIYALGIIFLQLITARPPMGLAHNMEEAMEVGELEEMLDPKVPDWPMEETIQFAKLALKCCELRRKDRPDLGTVVLPVLNRLRDLAYQSLSNLMVSALQHRGLP
Length806
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.07
Grand average of hydropathy-0.490
Instability index51.04
Isoelectric point6.05
Molecular weight90271.14
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12750
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.41|      31|      47|     309|     340|       1
---------------------------------------------------------------------------
  309-  340 (52.23/36.36)	ESNRS.............DLTRSFESNRSELTMSCESSrNSFESS
  345-  388 (50.19/30.15)	DSNRSggqmhiieshrigGYLRSFESNTSSLPNWSGAS.SSYEHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      57.36|      15|      15|     441|     455|       2
---------------------------------------------------------------------------
  441-  455 (24.62/15.62)	RAEEAAIQMAE.NERE
  458-  473 (17.51/ 9.05)	RTYPEASQIAQvAEIE
  479-  492 (15.23/ 6.95)	NAENKLLQEME.NKK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.36|      11|      15|     274|     285|       4
---------------------------------------------------------------------------
  274-  285 (16.93/12.92)	QQVNYYqRDNAD
  292-  302 (22.43/12.31)	RLPNLY.RDYPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.03|      15|      15|      77|      91|       7
---------------------------------------------------------------------------
   77-   91 (24.90/15.75)	YA.FLEQADLQTKEIL
   94-  109 (24.13/15.04)	YQcYCNRRGLQYKEVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.97|      14|      20|     219|     234|       9
---------------------------------------------------------------------------
  219-  234 (21.67/21.31)	CLLArsKKLGHGHEGG
  242-  255 (25.30/16.82)	CKMA..EKINLAIQGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12750 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TMSCESSRNSFESSRNSTDSNRSGGQMHII
2) VRPATNPNRHPGKGQSNNVLESSAKFQSTKSEPSV
327
175
356
209










Molecular Recognition Features






MoRF SequenceStartStop




NANANA