<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12742

Description U-box domain-containing protein 52
SequenceMDSNCVFSDDSPAVNSTAVAVDKDKNSQSAVKWTIDHLLMKNPNVVLIHVKNRNLHHTALDSNREVDTETQQIFLPYRGFCSRKGVQVREVVLEDVDVSKAITDYINNNYISNIVVGASSRNAITRRFRNADVASCLTKSAPDFCTVYVISKGKVSTVRSASRPVPAPSNPNPPPSKQPLIVLPPQFPPDQFESDDSIKSPFGKGWKSPGGASLERGSIERSSDYGSGSMRFLSGDLTSENLELHSDTSPRSSSSSSTQSVREVEAEMKRLKLELRQTMELYSVACKEAISAKQKALELHQWQMEESRKLEEARQAEEAALAIAEKEKARCKAAIEAAEAAQRLAEMEANKRKNAEIKAMRELEEKVRVLDALASNDFRYRKYTIEEIEAATESFTPSMKIGEGGYGPVYKATLDHTPVAIKVLRQDAAQGRKQFHQEVEILSCIRHPNMVLLLGACPEYGCLVYEYMENGSLEDRLFRRGNTPPIPWQIRFKIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDINYVSKISDVGLARLVPPSVADSITQYHMTATAGTFCYIDPEYQQTGKLGIKSDIYSLGVLLLQIITARPPMGLTHTVEKAISKGTLAELLDPTVPDWPVEEALVFAKLALKCSELRKKDRPDLGTVVLPELNRLRNLGNNELPTLNYFNYGPRSSNVSSSQYSTPRFSFPSLEFMKSSSSMTLLQQKPAMKITWH
Length722
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.07
Grand average of hydropathy-0.393
Instability index45.23
Isoelectric point7.89
Molecular weight80391.72
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12742
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.67|      16|      36|     230|     246|       1
---------------------------------------------------------------------------
  230-  246 (23.31/19.47)	MRFLSGDLtSENLELHS
  268-  283 (27.36/17.64)	MKRLKLEL.RQTMELYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.48|      23|      28|     326|     353|       3
---------------------------------------------------------------------------
  286-  308 (22.76/12.52)	..CKEAISAKQKALELHqwQMEESR
  329-  351 (37.74/27.48)	ARCKAAIEAAEAAQRLA..EMEANK
  355-  377 (29.98/21.36)	AEIKAMRELEEKVRVLD..ALASND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.13|      27|      48|     381|     410|       4
---------------------------------------------------------------------------
  381-  407 (47.39/44.55)	RKYTIEEIEAATESFTPSMKIGEGG...YG
  432-  461 (43.74/29.33)	RKQFHQEVEILSCIRHPNMVLLLGAcpeYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.34|      10|     450|     250|     259|       5
---------------------------------------------------------------------------
  250-  259 (19.74/11.24)	PRSSSSSSTQ
  679-  688 (18.60/10.17)	PRSSNVSSSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12742 with Med32 domain of Kingdom Viridiplantae
Unable to open file!