<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12737

Description U-box domain-containing protein 33-like isoform X2
SequenceMAARKKVPRHVGISGLMERGGEIEEDFLSHRNIYDKIFVAVGKEVKENESTLLWTLKNSRGKKICILHVHQPAQFIPGPMGTKFPASKVKEQEVGAYRELEEQRMHNILNEYLVICINQGVWAEKLVIENDDIKKGIVELITRHGIKNLVMGAAADKKYSKRMTDLKSKKAIYVREKAHFSCYIWFVCKGFLICTREREGIFVSPPILPSSPFSEISQQEYLKSLSFPQAQVHSLALSNPYQSDFGQARSLQYSTHEHGEIGAAFSSHEGSGRIQTPERQLSSEGIAGELEGISGKKISQGSEDLTWPSNEEAISVREDQSDDGSGLISWHDSSMELRYSSPANRQLLDEGRGNGNMYDQMKKTMEKAIEEAEKAKKEAWEESTRRQEAEMALLEAQCRAKHELKQREEIEELRAKEKQELESMKRHQGKVLEDLRIAQDQNSELERTLEELEQKFFSAVELLISLKSERDQLRNAVREAKNERDQLRNAGREAKGLRRSEEEGENPENLHFFSKLSLSEEGEIPENLHFFSKLSLSEIEEAARNFDPSLKIGEGANSSVFKGLLHHTPVAIKMFHSNSSQAHMKFQREVDVLSRMRHPNLVNLIGVCPEACSLVYEYLPNGSLEDRLTCKDNTPPLSWQTRTLIATGICSALIFLQSNALHRVVHGDLKPANILLDTDFVSKLSDFGICCCLFPRKANSASSSTQCHETNPKGVLAHMDPEFLDTGELIPMSDVYSFGIVLLRLLTGRPAMGIVEEVQHALDKGKLKQVLDGSAGNWPFVQAQQLAHLALRCCERNLKSRPNLASEVWRVLEPMRASCRTSSPFCLGSGEHCRAPSYFICPIFQEVMQDPHVAADGYTYEAEGIRAWLDSGHDTSPMTNLKLANRNLIPNYALRSAIQEWRHQ
Length904
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.07
Grand average of hydropathy-0.513
Instability index43.23
Isoelectric point6.17
Molecular weight102051.70
Publications
PubMed=23663246

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12737
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.59|      15|      15|     503|     517|       1
---------------------------------------------------------------------------
  503-  517 (32.46/20.51)	EGENPENLHFFSKLS
  521-  535 (32.12/20.22)	EGEIPENLHFFSKLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     101.04|      20|      20|     403|     422|       2
---------------------------------------------------------------------------
  336-  359 (17.68/ 6.86)	ELRysspaNRQL..LDEG.RGNGNM.YD
  360-  382 (17.10/ 6.40)	QMK.....KTMEkaIEEAeKAKKEAWEE
  386-  403 (18.49/ 7.51)	..R.....QEAE..MALL.EAQCRAKHE
  404-  422 (23.51/11.52)	.LK.....QREE..IEEL.RAKEKQELE
  425-  444 (24.26/12.12)	KRH.....QGKV..LEDL.RIAQDQNSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.58|      29|     239|     616|     645|       3
---------------------------------------------------------------------------
  616-  645 (50.62/31.87)	YEYLPNGsLEDRLTCKDNTPP...LSWQTRTLI
  858-  889 (46.96/25.33)	YTYEAEG.IRAWLDSGHDTSPmtnLKLANRNLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.00|      15|      15|     234|     248|       4
---------------------------------------------------------------------------
  234-  248 (26.41/15.88)	SLALSNPYQSDFGQA
  250-  264 (26.59/16.04)	SLQYSTHEHGEIGAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.81|      15|      15|     266|     280|       5
---------------------------------------------------------------------------
  266-  280 (26.54/14.19)	SSHEGSGRIQTPERQ
  282-  296 (22.27/10.79)	SSEGIAGELEGISGK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12737 with Med32 domain of Kingdom Viridiplantae
Unable to open file!