<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12732

Description U-box domain-containing protein 35-like isoform X1
SequenceMWLNKGNSERKDDARGLVAVAIDKDKGSQYSLKWAVDHILGKGQTVILIHVNQKASTLPSPTGSQVSISDVRDDVASTYRQEQDGQTKELFLPFRCFCTRKDIQCKDVVIEDVDIAKALIEYVSHNVIENLVVGASTKNGFMRRFKSTDVATTVSKGAPDFCTVYVISKGKISSVRSASRPAPTVSPLRNQLQAQNQLSIKSEPVESNNSYSSRGAAPLSPFEPPRNSIHSELESMKSPFTRRGLNGKSYGEISLPDSDISFVSSGRPSVDRMFPPIYDHLESSRTPRLSNCSDLDLQSFESVQSGPKSDLHSMHGISSFSHESDSSQTMEDVEAEMRRLKLELKQTMDMYSTACKEALTAKQKARELHRWKMEEERRLEEARLAEEAALAIAEKEKAKCKAAIEAAEAAQRIAELEAQKRLNAEMKAIKESEERKKVLESLAHKDCRYRKYTIEEIEAATEYFSETRKIGEGGYGPVYKCYLDHTPVAIKVLRPDAAQGRQQFQQEVEILSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFRRGNTPVLSWQVRFRIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPNVADNVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMFLQIITAKPPMGLTHHVEHAIEKGKFTEMLDPAVPDWPIEEALCFAKLSLRCSELRRKDRPDLGTEVLPELNRLRNLAEENMPNIVLVGSASASPNHSNISMNHDILSDPQFVQSGYESSRSRSSASSLSVTGRPPRIDG
Length796
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.06
Grand average of hydropathy-0.468
Instability index53.36
Isoelectric point6.71
Molecular weight88923.99
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12732
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.99|      20|      28|     380|     405|       1
---------------------------------------------------------------------------
  380-  402 (27.07/33.06)	EEA.RLAEeaaLAIAEKEKAKCKA
  408-  428 (27.93/14.52)	EAAqRIAE...LEAQKRLNAEMKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      62.95|      17|      17|     206|     222|       2
---------------------------------------------------------------------------
  180-  213 (19.18/ 8.52)	RPAPTVSPLrnqlqaqnqlsiksepvE.SNNSYSS
  214-  231 (27.14/15.04)	RGAAPLSPF.................EpPRNSIHS
  232-  264 (16.63/ 6.44)	ELESMKSPF.trrglngksygeislpD.SDISFVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.51|      35|     438|     288|     325|       7
---------------------------------------------------------------------------
  288-  325 (53.31/46.07)	RLSNCSDLDLQSFESVQSGPKSDLHSmhGIsSFSHE..SD
  729-  765 (57.19/36.97)	RLRNLAEENMPNIVLVGSASASPNHS..NI.SMNHDilSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.35|      14|      34|      19|      32|       8
---------------------------------------------------------------------------
   19-   32 (23.32/14.37)	AVAIDKDKGSQYSL
   55-   68 (24.04/15.04)	ASTLPSPTGSQVSI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12732 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASRPAPTVSPLRNQLQAQNQLSIKSEPVESNNSYSSRGAAPLSPFEPPRNSIHSELESMKSPFTRRGLNGKS
2) RLSNCSDLDLQSFESVQSGPKSDLHSMHGISSFSHESDSSQTMEDVEAEMRR
178
288
249
339










Molecular Recognition Features






MoRF SequenceStartStop




1) RMFPPIYD
272
279