<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12725

Description U-box domain-containing protein 35-like isoform X2
SequenceMWLNKGNSERKDDARGLVAVAIDKDKGSQYSLKWAVDHILGKGQTVILIHVNQKASTLPSPTGSQVSISDVRDDVASTYRQEQDGQTKELFLPFRCFCTRKDIQCKDVVIEDVDIAKALIEYVSHNVIENLVVGASTKNGFMRFKSTDVATTVSKGAPDFCTVYVISKGKISSVRSASRPAPTVSPLRNQLQAQNQLSIKSEPVESNNSYSSRGAAPLSPFEPPRNSIHSELESMKSPFTRRGLNGKSYGEISLPDSDISFVSSGRPSVDRMFPPIYDHLESSRTPRLSNCSDLDLQSFESVQSGPKSDLHSMHGISSFSHESDSSQTMEDVEAEMRRLKLELKQTMDMYSTACKEALTAKQKARELHRWKMEEERRLEEARLAEEAALAIAEKEKAKCKAAIEAAEAAQRIAELEAQKRLNAEMKAIKESEERKKVLESLAHKDCRYRKYTIEEIEAATEYFSETRKIGEGGYGPVYKCYLDHTPVAIKVLRPDAAQGRQQFQQEVEILSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFRRGNTPVLSWQVRFRIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPNVADNVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMFLQIITAKPPMGLTHHVEHAIEKGKFTEMLDPAVPDWPIEEALCFAKLSLRCSELRRKDRPDLGTEVLPELNRLRNLAEENMPNIVLVGSASASPNHSNISMNHDILSDPQFVQSGYESSRSRSSASSLSVTGRPPRIDG
Length795
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.06
Grand average of hydropathy-0.463
Instability index52.69
Isoelectric point6.59
Molecular weight88767.80
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12725
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.99|      20|      28|     379|     404|       1
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  379-  401 (27.07/28.17)	EEA.RLAEeaaLAIAEKEKAKCKA
  407-  427 (27.93/12.20)	EAAqRIAE...LEAQKRLNAEMKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.32|      17|      17|     205|     221|       2
---------------------------------------------------------------------------
  179-  212 (19.18/ 7.39)	RPAPTVSPLrnqlqaqnqlsiksepvE.SNNSYSS
  213-  230 (27.14/13.15)	RGAAPLSPF.................EpPRNSIHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.35|      14|      34|      19|      32|       4
---------------------------------------------------------------------------
   19-   32 (23.32/14.68)	AVAIDKDKGSQYSL
   55-   68 (24.04/15.37)	ASTLPSPTGSQVSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.58|      19|     503|     249|     268|       5
---------------------------------------------------------------------------
  248-  267 (31.89/25.19)	SYGEISLPDSDiSFVSSGRP
  268-  286 (33.69/21.88)	SVDRMFPPIYD.HLESSRTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.51|      35|     438|     287|     324|       6
---------------------------------------------------------------------------
  287-  324 (53.31/48.10)	RLSNCSDLDLQSFESVQSGPKSDLHSmhGIsSFSHE..SD
  728-  764 (57.19/38.62)	RLRNLAEENMPNIVLVGSASASPNHS..NI.SMNHDilSD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12725 with Med32 domain of Kingdom Viridiplantae
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