<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12724

Description probable mediator of RNA polymerase II transcription subunit 26a
SequenceMAASEASLVDFWRKFFQGAHRDIFTVIEKAITVASLDRPDEFKRNKLRIIEALFSYGMKNGSSGRCIGSDSMQSEVVAERDCNEKKIIESNVSCSTNNGSNDQTEEVVKPKKIEGDDKTDEIAEVLRIKVAVNYNGHPDEKSLLETLGRLQGMELSFQTLKATEIGTAVNEIRKQTKSKKVRKVARAIIERWRATVDQWLEKENKALSSVSTQATMSSIEFEATQSDERTKMQQGPTITTYTVCEKSETTKRNLQDAYQRSENAKKQRCIKFLELQKLPKKPLPRGAI
Length288
PositionUnknown
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.06
Grand average of hydropathy-0.694
Instability index43.27
Isoelectric point9.04
Molecular weight32574.66
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12724
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     117.94|      33|      35|      70|     103|       1
---------------------------------------------------------------------------
   45-   65 (24.76/13.02)	.............NKLRIIEA.LFSYGMK.NGSSGR
   70-  103 (51.12/39.52)	DSMQSEVVaERDCNEKKIIES.NVSCSTN.NGSNDQ
  106-  140 (42.07/27.38)	EVVKPKKI.EGDDKTDEIAEVlRIKVAVNyNGHPDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.91|      39|     214|       5|      44|       2
---------------------------------------------------------------------------
    5-   44 (63.77/42.96)	EASLVDFWRKFFQGAHRDIFTVIEKAITVASlDRPDEFKR
  222-  260 (68.14/41.87)	EATQSDERTKMQQGPTITTYTVCEKSETTKR.NLQDAYQR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12724 with Med26 domain of Kingdom Viridiplantae
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