<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12721

Description U-box domain-containing protein 33-like
SequenceMDALVADFQEKILCGLELMMTLKSQRDELRSDLQRERQLRYEFQKERDKLQTERDDLRNERDRMQRKQEELRNKLNELQIERDRAATGAEQMRRKRSDGEEGTSSEERWQFSEITSTEIERATANFDPSKKISEGVNGRSVYRGQLRNTQVAIKISGFDNLQNRTEFHREVEVLSRVRHPNIVSLIGVCPENYLLVYEYLPSGTLEDRLNCKDDTSPLSWQIRTRIAAEICSAIIFLHSNHPYRIVHGNLRPENVLLDENLVSKLCGFGNSGLIPREGVSPRTSTPCRRIDPIARAYVDPEFVETQELTPASDVYSFGVILLLLLTGGPAMGIVQTVKSALNNGTLDKMLDESAGSWPLEQAKQLIYWALKCCEEIRQRRPDLELITITLERLKQGSCGASSSSSRPISESEPRETPSHFLCPIFQETMRDPRMAADGYTYEYAAIREWLDRGHDTSPMTNLPLINQELTPNLTLRSAIQEW
Length482
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.06
Grand average of hydropathy-0.617
Instability index44.29
Isoelectric point5.50
Molecular weight55278.84
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12721
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.17|      19|     249|     197|     218|       1
---------------------------------------------------------------------------
  197-  218 (31.21/27.71)	YEYlpsGTLEDRLNCKDDTSPL
  441-  459 (37.96/24.24)	YEY...AAIREWLDRGHDTSPM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.53|      23|     109|     109|     160|       2
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   79-  104 (35.35/28.48)	QIERdraATGAEQMRRKRSDGEEGTS
  118-  140 (40.18/44.71)	EIER...ATANFDPSKKISEGVNGRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.52|      41|     130|     259|     300|       3
---------------------------------------------------------------------------
  259-  300 (71.14/41.31)	ENLVSKLCGFGNSGLIPREGVSPRtSTPCRRIDPI.ARAYVDP
  391-  432 (71.38/37.70)	ERLKQGSCGASSSSSRPISESEPR.ETPSHFLCPIfQETMRDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.36|      14|     109|      48|      66|       4
---------------------------------------------------------------------------
   22-   35 (23.90/ 7.66)	LKSQRDELRSD...LQR
   50-   66 (19.46/18.30)	LQTERDDLRNErdrMQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.28|      32|      60|     164|     195|       8
---------------------------------------------------------------------------
  164-  195 (56.18/45.18)	RTEFHREVE...VLSRVRHPNIVSLIGVCPENYLL
  223-  257 (52.10/41.32)	RTRIAAEICsaiIFLHSNHPYRIVHGNLRPENVLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12721 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DKLQTERDDLRNERDRMQRKQEELRNKLNELQIERDRAATGAEQMRRKRSDGEEGTSSEERWQFS
48
112










Molecular Recognition Features






MoRF SequenceStartStop




NANANA