<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12717

Description U-box domain-containing protein 34
SequenceMETLVLEDDDPASALLRYLSESGSQSLVLGSSSSNFITRYISEVLKTILEITVQLFMQSELHAEVERLQQELHNTIVLYKQTCEELICTQNKVELLSSECLEDVRRVNDALEREEVLRRIVAEEKAKHLEAAKEVEMARKLLDKETRERVEVLSQLRHPHMVLLLGACPENGCLVYEYLENGSLEECLFRKKGTPPLPWFVRFKIAFDVACGLAFLHNSKPEPIIHRDLKPGNILLDGNFVSKIADVGLAKLMSNIVPDNITEYRDSVLAGTLHYMDPEYQRTGTIRPKSDIYAFGIITLQLLTACHPNGLLIKVENAINNGSFADILDNSVADWPLAESEELARVALKCSRLRCRDRPDLEAEVLPVLKKLSSIAASSVKLQKNIYSPSHYFCPILQEIMEDPYIASDGFTYEYRAIKAWLEKHSISPVTKLKFPHTRLTPNHALRSAIQEWKPRVSFSSS
Length462
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.07
Grand average of hydropathy-0.181
Instability index52.98
Isoelectric point5.72
Molecular weight52360.66
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12717
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     146.85|      36|      36|     193|     228|       1
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  193-  228 (71.25/44.03)	GTPPLPW.FVRFK...IAFDVACGLA.FLHNSKPEPII.HRD
  232-  266 (41.88/23.30)	GNILLDGnFVS.K...IA.DV..GLAkLMSNIVPDNITeYRD
  284-  312 (33.71/17.53)	GT.......IRPKsdiYAFGIIT.LQ.LLTACHPNGLL....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.97|      19|      20|       2|      21|       2
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    2-   21 (27.08/25.84)	ETLVLeDDDPASALLRYLSE
   25-   43 (31.90/24.62)	QSLVL.GSSSSNFITRYISE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.68|      13|      20|      73|      85|       3
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   73-   85 (23.09/15.01)	HNTIVLYKQTCEE
   90-  102 (19.59/11.73)	QNKVELLSSECLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.28|      16|      33|     105|     120|       5
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  105-  120 (26.37/19.69)	RRVNDALERE..EVLRRI
  139-  156 (20.90/14.04)	RKLLDKETRErvEVLSQL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.16|      31|      50|     369|     399|       6
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  369-  399 (51.90/31.84)	LKKLSSIAASSVKLQKNIYSPSHYFCPILQE
  422-  452 (52.25/32.09)	LEKHSISPVTKLKFPHTRLTPNHALRSAIQE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12717 with Med32 domain of Kingdom Viridiplantae
Unable to open file!